Aliases for MGAT3-AS1 Gene

Subcategory (RNA class) for MGAT3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MGAT3-AS1 Gene

  • MGAT3 Antisense RNA 1 2 3 5
  • MGAT3-AS1 2 5 165
  • Transcript Predicting Survival In AKI (Acute Kidney Injury) 2 3
  • TapSAKI 2 3
  • NONHSAG033968.2 91
  • HSALNG0135509 164

External Ids for MGAT3-AS1 Gene

Previous GeneCards Identifiers for MGAT3-AS1 Gene

  • GC22M039482
  • GC22M039838
  • GC22M042778
  • GC22M042890
  • GC22M042947
  • GC22M044558
  • GC22M039850
  • GC22M039945
  • GC22M040634
  • GC22M041081
  • GC22M041479
  • GC22M041889
  • GC22M042316
  • GC22M042668

Summaries for MGAT3-AS1 Gene

GeneCards Summary for MGAT3-AS1 Gene

MGAT3-AS1 (MGAT3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MGAT3-AS1 include Acute Kidney Failure.

Additional gene information for MGAT3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MGAT3-AS1 Gene

Genomics for MGAT3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MGAT3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MGAT3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MGAT3-AS1 Gene

Genomic Locations for MGAT3-AS1 Gene
chr22:39,475,806-39,477,308
(GRCh38/hg38)
Size:
1,503 bases
Orientation:
Minus strand
chr22:39,871,812-39,872,827
(GRCh37/hg19)
Size:
1,016 bases
Orientation:
Minus strand

Genomic View for MGAT3-AS1 Gene

Genes around MGAT3-AS1 on UCSC Golden Path with GeneCards custom track
MGAT3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MGAT3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGAT3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGAT3-AS1 Gene

Proteins for MGAT3-AS1 Gene

Post-translational modifications for MGAT3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGAT3-AS1 Gene

Domains & Families for MGAT3-AS1 Gene

Gene Families for MGAT3-AS1 Gene

genes like me logo Genes that share domains with MGAT3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MGAT3-AS1 Gene

Function for MGAT3-AS1 Gene

Phenotypes From GWAS Catalog for MGAT3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGAT3-AS1 Gene

Localization for MGAT3-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MGAT3-AS1 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGAT3-AS1 Gene

Pathways & Interactions for MGAT3-AS1 Gene

PathCards logo

SuperPathways for MGAT3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MGAT3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MGAT3-AS1 Gene

Drugs & Compounds for MGAT3-AS1 Gene

No Compound Related Data Available

Transcripts for MGAT3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MGAT3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001B3E73_9606 lncRNA 498 4

HGNC: 51356,

RefSeq: NR_126469,

Ensembl: ENST00000432239 (view in UCSC) ,

LNCipedia: MGAT3-AS1:3,

URS00008BE459_9606 lncRNA 931 3

LncBook: HSALNT0278001,

LNCipedia: MGAT3-AS1:1,

NONCODE: NONHSAT086793.2,

URS00008B46F1_9606 lncRNA 745 3

LncBook: HSALNT0278000,

LNCipedia: MGAT3-AS1:2,

NONCODE: NONHSAT086794.2,

URS00009AF8FB_9606 lncRNA 498 2

LncBook: HSALNT0277998,

NONCODE: NONHSAT192923.1,

URS0000EA6D4F_9606 lncRNA 500 1

LncBook: HSALNT0289368,

MGAT3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MGAT3-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MGAT3-AS1 Gene

No ASD Table

Relevant External Links for MGAT3-AS1 Gene

GeneLoc Exon Structure for
MGAT3-AS1

Expression for MGAT3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MGAT3-AS1 Gene

genes like me logo Genes that share expression patterns with MGAT3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGAT3-AS1 Gene

Orthologs for MGAT3-AS1 Gene

Evolution for MGAT3-AS1 Gene

ENSEMBL:
Gene Tree for MGAT3-AS1 (if available)
TreeFam:
Gene Tree for MGAT3-AS1 (if available)

No data available for Orthologs for MGAT3-AS1 Gene

Paralogs for MGAT3-AS1 Gene

No data available for Paralogs for MGAT3-AS1 Gene

Variants for MGAT3-AS1 Gene

Additional dbSNP identifiers (rs#s) for MGAT3-AS1 Gene

Additional Variant Information for MGAT3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MGAT3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MGAT3-AS1 Gene

Disorders for MGAT3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MGAT3-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
acute kidney failure
  • acute renal failure
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with MGAT3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MGAT3-AS1 Gene

Publications for MGAT3-AS1 Gene

  1. Circulating long noncoding RNATapSaki is a predictor of mortality in critically ill patients with acute kidney injury. (PMID: 25294924) Lorenzen JM … Thum T (Clinical chemistry 2015) 2 3
  2. LncRNA TapSAKI promotes inflammation injury in HK-2 cells and urine derived sepsis-induced kidney injury. (PMID: 30666657) Shen J … Pan G (The Journal of pharmacy and pharmacology 2019) 3

Products for MGAT3-AS1 Gene

Sources for MGAT3-AS1 Gene