Aliases for MFSD4A-AS1 Gene

Subcategory (RNA class) for MFSD4A-AS1 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for MFSD4A-AS1 Gene

  • MFSD4A Antisense RNA 1 2 3
  • NONHSAG004060 94
  • Lnc-ELK4-1 170

External Ids for MFSD4A-AS1 Gene

Summaries for MFSD4A-AS1 Gene

GeneCards Summary for MFSD4A-AS1 Gene

MFSD4A-AS1 (MFSD4A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MFSD4A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MFSD4A-AS1 Gene

Genomics for MFSD4A-AS1 Gene

GeneHancer (GH) Regulatory Elements for MFSD4A-AS1 Gene

Promoters and enhancers for MFSD4A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J205567 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 750.6 +0.9 907 2.7 CTCF GLIS2 ZIC2 ZBTB8A ATF7 SP2 EZH2 ZNF10 ZNF423 ZNF18 MFSD4A MFSD4A-AS1 RF00004-009 RNU2-19P ELK4
GH01J205591 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -24.1 -24131 4 ZNF24 SP1 ZBTB40 CTCF RBPJ SMARCE1 MIXL1 MYC CC2D1A ETV6 RNU6-418P RF00026-101 DSTYK NFASC MFSD4A RAB29 ELK4 MFSD4A-AS1
GH01J205565 Enhancer 0.7 ENCODE dbSUPER 0.6 +3.4 3380 1.1 TCF7L2 ZNF121 PRDM1 PRDM10 CTBP1 HES1 NFIB GATA3 JUND FOXA1 RF00004-009 RNU2-19P ELK4 MFSD4A NUCKS1 MFSD4A-AS1 RF00017-455
GH01J205582 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -13.2 -13196 3.4 ZBTB40 NFIB ELF3 KAT8 RXRB ESRRA SAP130 GABPA NFIC ZGPAT MFSD4A MFSD4A-AS1 RF00026-101 RNU6-418P
GH01J205543 Promoter/Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 0.3 +25.4 25410 1.6 POLR2A ZNF217 MNT PRDM1 GLIS2 CREB1 PRDM10 BRCA1 CTBP1 ZNF629 MFSD4A RNU2-19P CDK18 RNU6-418P LOC100420878 ELK4 RF00017-455 RF00004-009 MFSD4A-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MFSD4A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MFSD4A-AS1 Gene

Genomic Locations for MFSD4A-AS1 Gene
chr1:205,532,662-205,569,305
(GRCh38/hg38)
Size:
36,644 bases
Orientation:
Minus strand
chr1:205,523,401-205,525,763
(GRCh37/hg19)
Size:
2,363 bases
Orientation:
Minus strand

Genomic View for MFSD4A-AS1 Gene

Genes around MFSD4A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MFSD4A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MFSD4A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MFSD4A-AS1 Gene

Proteins for MFSD4A-AS1 Gene

Post-translational modifications for MFSD4A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MFSD4A-AS1 Gene

Domains & Families for MFSD4A-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MFSD4A-AS1 Gene

Function for MFSD4A-AS1 Gene

Phenotypes From GWAS Catalog for MFSD4A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MFSD4A-AS1 Gene

Localization for MFSD4A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MFSD4A-AS1 Gene

Pathways & Interactions for MFSD4A-AS1 Gene

PathCards logo

SuperPathways for MFSD4A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MFSD4A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MFSD4A-AS1 Gene

Drugs & Compounds for MFSD4A-AS1 Gene

No Compound Related Data Available

Transcripts for MFSD4A-AS1 Gene

mRNA/cDNA for MFSD4A-AS1 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(8) RNACentral transcripts :
(6) LNCipedia transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MFSD4A-AS1 Gene

No ASD Table

Relevant External Links for MFSD4A-AS1 Gene

GeneLoc Exon Structure for
MFSD4A-AS1
ECgene alternative splicing isoforms for
MFSD4A-AS1

Expression for MFSD4A-AS1 Gene

SOURCE GeneReport for Unigene cluster for MFSD4A-AS1 Gene:

Hs.537020
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MFSD4A-AS1 Gene

Orthologs for MFSD4A-AS1 Gene

No data available for Orthologs and Evolution for MFSD4A-AS1 Gene

Paralogs for MFSD4A-AS1 Gene

No data available for Paralogs for MFSD4A-AS1 Gene

Variants for MFSD4A-AS1 Gene

Sequence variations from dbSNP and Humsavar for MFSD4A-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000111969 -- 205,565,390(-) A/C intron_variant
rs1000340105 -- 205,558,293(-) C/A/G non_coding_transcript_variant
rs1000409872 -- 205,558,597(-) G/T intron_variant
rs1000544589 -- 205,568,036(-) G/A intron_variant
rs1000986772 -- 205,561,019(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MFSD4A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv509602 CNV insertion 20534489

Additional Variant Information for MFSD4A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MFSD4A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MFSD4A-AS1 Gene

Disorders for MFSD4A-AS1 Gene

No disorders were found for MFSD4A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MFSD4A-AS1 Gene

Publications for MFSD4A-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for MFSD4A-AS1 Gene

Products for MFSD4A-AS1 Gene

Sources for MFSD4A-AS1 Gene