Aliases for METTL7A Gene

Aliases for METTL7A Gene

  • Methyltransferase Like 7A 2 3 5
  • Methyltransferase-Like Protein 7A 3 4
  • Protein AAM-B 3 4
  • DKFZP586A0522 2
  • EC 2.1.1.- 4
  • EC 2.1.1 51
  • METTL7A 5
  • AAM-B 3
  • AAMB 3

External Ids for METTL7A Gene

Previous GeneCards Identifiers for METTL7A Gene

  • GC12P049604
  • GC12P051318
  • GC12P048351

Summaries for METTL7A Gene

GeneCards Summary for METTL7A Gene

METTL7A (Methyltransferase Like 7A) is a Protein Coding gene. Among its related pathways are Innate Immune System. Gene Ontology (GO) annotations related to this gene include methyltransferase activity and S-adenosylmethionine-dependent methyltransferase activity. An important paralog of this gene is METTL7B.

UniProtKB/Swiss-Prot Summary for METTL7A Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for METTL7A Gene

Genomics for METTL7A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for METTL7A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J050921 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +2.2 2228 7.4 GATAD2A PRDM10 REST ZNF512 LEF1 IKZF1 ZNF692 POLR2A PRDM1 RXRB METTL7A SMARCD1 SLC11A2 HNRNPA3P10 LIMA1 ATF1 LETMD1 TFCP2 ENSG00000257298 RNU6-1273P
GH12J050930 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.8 +10.1 10089 5.1 GATAD2A PRDM10 TFE3 SOX13 RCOR2 FOXA1 DDX20 RBFOX2 ZNF24 RXRB ENSG00000274156 SLC11A2 RNU6-1273P CSRNP2 METTL7A HIGD1C
GH12J051398 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 3.6 +479.6 479640 10.2 PRDM10 ZNF629 ZNF692 PRDM1 ZNF37A ATF7 ZNF561 SCRT2 ZBTB44 ZNF639 GALNT6 HIGD1C SCN8A ENSG00000271065 SLC4A8 METTL7A piR-57460-128
GH12J051004 Enhancer 0.9 ENCODE dbSUPER 4.9 +82.2 82170 2.7 CTCF TARDBP ZHX2 FOXA1 REST ATF7 RFX1 SMARCA5 ESR1 ZKSCAN1 SLC11A2 CSRNP2 METTL7A RNU7-39P RF00066-046 lnc-CSRNP2-3 lnc-CSRNP2-2 HIGD1C
GH12J050919 Enhancer 0.3 Ensembl dbSUPER 0.7 -3.6 -3571 0.2 SLC11A2 RNU6-1273P METTL7A piR-46847-063 TMPRSS12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around METTL7A on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for METTL7A

Top Transcription factor binding sites by QIAGEN in the METTL7A gene promoter:
  • c-Myc
  • CREB
  • deltaCREB
  • E47
  • Hand1
  • Lmo2
  • MRF-2
  • Pbx1a
  • SEF-1 (1)
  • ZIC2

Genomic Locations for METTL7A Gene

Genomic Locations for METTL7A Gene
chr12:50,923,472-50,932,510
(GRCh38/hg38)
Size:
9,039 bases
Orientation:
Plus strand
chr12:51,317,255-51,326,300
(GRCh37/hg19)
Size:
9,046 bases
Orientation:
Plus strand

Genomic View for METTL7A Gene

Genes around METTL7A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
METTL7A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for METTL7A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for METTL7A Gene

Proteins for METTL7A Gene

  • Protein details for METTL7A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H8H3-MET7A_HUMAN
    Recommended name:
    Methyltransferase-like protein 7A
    Protein Accession:
    Q9H8H3
    Secondary Accessions:
    • Q9H7R3
    • Q9UHZ7
    • Q9Y422

    Protein attributes for METTL7A Gene

    Size:
    244 amino acids
    Molecular mass:
    28319 Da
    Quaternary structure:
    • Self-associates.
    SequenceCaution:
    • Sequence=AAF20268.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for METTL7A Gene

Selected DME Specific Peptides for METTL7A Gene

Q9H8H3:
  • RVLRPGG
  • DVVVCTLVLCSV

Post-translational modifications for METTL7A Gene

  • Ubiquitination at Lys34
  • Modification sites at PhosphoSitePlus

Other Protein References for METTL7A Gene

Domains & Families for METTL7A Gene

Gene Families for METTL7A Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for METTL7A Gene

InterPro:
Blocks:
  • Methyltransferase type 11
ProtoNet:

Suggested Antigen Peptide Sequences for METTL7A Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ52156, moderately similar to Mus musculus methyltransferase like 7A (Mettl7a), mRNA (B4DDW1_HUMAN)
  • Protein AAM-B (MET7A_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q9H8H3

UniProtKB/Swiss-Prot:

MET7A_HUMAN :
  • Belongs to the methyltransferase superfamily.
Family:
  • Belongs to the methyltransferase superfamily.
genes like me logo Genes that share domains with METTL7A: view

Function for METTL7A Gene

Molecular function for METTL7A Gene

UniProtKB/Swiss-Prot Function:
Probable methyltransferase.

Enzyme Numbers (IUBMB) for METTL7A Gene

Phenotypes From GWAS Catalog for METTL7A Gene

Gene Ontology (GO) - Molecular Function for METTL7A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008168 methyltransferase activity IBA 21873635
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with METTL7A: view
genes like me logo Genes that share phenotypes with METTL7A: view

Animal Model Products

CRISPR Products

miRNA for METTL7A Gene

miRTarBase miRNAs that target METTL7A

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for METTL7A

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for METTL7A Gene

Localization for METTL7A Gene

Subcellular locations from UniProtKB/Swiss-Prot for METTL7A Gene

Lipid droplet. Endoplasmic reticulum. Membrane.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for METTL7A gene
Compartment Confidence
extracellular 4
endoplasmic reticulum 4
plasma membrane 3
cytoskeleton 1
mitochondrion 1
peroxisome 1
nucleus 1
endosome 1
cytosol 1
lysosome 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Lipid droplets (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for METTL7A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005783 endoplasmic reticulum IEA --
GO:0005811 lipid droplet IEA,IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with METTL7A: view

Pathways & Interactions for METTL7A Gene

PathCards logo

SuperPathways for METTL7A Gene

genes like me logo Genes that share pathways with METTL7A: view

Pathways by source for METTL7A Gene

3 Reactome pathways for METTL7A Gene

Gene Ontology (GO) - Biological Process for METTL7A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032259 methylation IEA --
GO:0043312 neutrophil degranulation TAS --
genes like me logo Genes that share ontologies with METTL7A: view

No data available for SIGNOR curated interactions for METTL7A Gene

Drugs & Compounds for METTL7A Gene

No Compound Related Data Available

Transcripts for METTL7A Gene

mRNA/cDNA for METTL7A Gene

1 REFSEQ mRNAs :
14 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for METTL7A

Alternative Splicing Database (ASD) splice patterns (SP) for METTL7A Gene

No ASD Table

Relevant External Links for METTL7A Gene

GeneLoc Exon Structure for
METTL7A

Expression for METTL7A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for METTL7A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for METTL7A Gene

This gene is overexpressed in Nasal epithelium (12.2) and Liver (9.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for METTL7A Gene



Protein tissue co-expression partners for METTL7A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for METTL7A

SOURCE GeneReport for Unigene cluster for METTL7A Gene:

Hs.744021

Evidence on tissue expression from TISSUES for METTL7A Gene

  • Liver(4.6)
  • Thyroid gland(4.5)
  • Pancreas(4.3)
  • Nervous system(4)
  • Kidney(3)
  • Stomach(2.1)
genes like me logo Genes that share expression patterns with METTL7A: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for METTL7A Gene

Orthologs for METTL7A Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for METTL7A Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia METTL7A 30 31
  • 99.04 (n)
OneToOne
Cow
(Bos Taurus)
Mammalia METTL7A 30 31
  • 87.7 (n)
OneToMany
-- 31
  • 80 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia METTL7A 30 31
  • 84.58 (n)
OneToOne
Mouse
(Mus musculus)
Mammalia Mettl7a1 30 17 31
  • 83.61 (n)
OneToMany
Mettl7a2 31
  • 79 (a)
OneToMany
Mettl7a3 31
  • 78 (a)
OneToMany
AB099516 31
  • 53 (a)
OneToMany
Rat
(Rattus norvegicus)
Mammalia Mettl7a 30
  • 83.61 (n)
Chicken
(Gallus gallus)
Aves METTL7A 30
  • 65.15 (n)
-- 31
  • 60 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia -- 31
  • 63 (a)
ManyToMany
-- 31
  • 59 (a)
ManyToMany
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia mettl7a 30
  • 63.25 (n)
Str.4191 30
African clawed frog
(Xenopus laevis)
Amphibia Xl.20056 30
Zebrafish
(Danio rerio)
Actinopterygii si:ch211-173n18.3 30 31
  • 58.94 (n)
ManyToMany
si:ch211-173n18.4 31
  • 52 (a)
ManyToMany
mettl7a 31
  • 51 (a)
ManyToMany
Thale Cress
(Arabidopsis thaliana)
eudicotyledons AT1G69523 30
  • 51.32 (n)
Rice
(Oryza sativa)
Liliopsida Os02g0744100 30
  • 49.35 (n)
Species where no ortholog for METTL7A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for METTL7A Gene

ENSEMBL:
Gene Tree for METTL7A (if available)
TreeFam:
Gene Tree for METTL7A (if available)
Aminode:
Evolutionary constrained regions (ECRs) for METTL7A: view image

Paralogs for METTL7A Gene

Paralogs for METTL7A Gene

(1) SIMAP similar genes for METTL7A Gene using alignment to 3 proteins:

  • MET7A_HUMAN
  • F8VQX6_HUMAN
  • H0YI09_HUMAN

Pseudogenes.org Pseudogenes for METTL7A Gene

genes like me logo Genes that share paralogs with METTL7A: view

Variants for METTL7A Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for METTL7A Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
rs28372674 - p.Ala134Thr

Additional dbSNP identifiers (rs#s) for METTL7A Gene

Variation tolerance for METTL7A Gene

Residual Variation Intolerance Score: 34.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.45; 54.77% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for METTL7A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
METTL7A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for METTL7A Gene

Disorders for METTL7A Gene

Additional Disease Information for METTL7A

No disorders were found for METTL7A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for METTL7A Gene

Publications for METTL7A Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. FAM105A/OTULINL Is a Pseudodeubiquitinase of the OTU-Class that Localizes to the ER Membrane. (PMID: 31056421) Ceccarelli DF … Sicheri F (Structure (London, England : 1993) 2019) 3
  5. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. (PMID: 31091453) Shami Shah A … Baskin JM (Cell reports 2019) 3

Products for METTL7A Gene

  • Signalway Proteins for METTL7A

Sources for METTL7A Gene