Aliases for MESTP1 Gene

Aliases for MESTP1 Gene

  • Mesoderm Specific Transcript Pseudogene 1 2 3 5
  • Mesoderm Specific Transcript Homolog (Mouse) Pseudogene 1 2
  • Mesoderm Specific Transcript Homolog Pseudogene 1 3

External Ids for MESTP1 Gene

Previous GeneCards Identifiers for MESTP1 Gene

  • GC06M129291
  • GC06M129293
  • GC06M126830

Summaries for MESTP1 Gene

GeneCards Summary for MESTP1 Gene

MESTP1 (Mesoderm Specific Transcript Pseudogene 1) is a Pseudogene.

Additional gene information for MESTP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MESTP1 Gene

Genomics for MESTP1 Gene

GeneHancer (GH) Regulatory Elements for MESTP1 Gene

Promoters and enhancers for MESTP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J128929 Enhancer 0.3 FANTOM5 500.7 +0.5 522 0.5 MESTP1 lnc-PTPRK-3 LAMA2
GH06J128954 Enhancer 0.4 Ensembl 0.4 -24.4 -24385 1.6 MAFF MAFK CHD7 MESTP1 AB755817 LAMA2
GH06J128966 Enhancer 0.3 Ensembl 0.3 -36.8 -36785 0.4 FOXA2 FOXA1 AB755817 MESTP1 LAMA2
GH06J128953 Enhancer 0.2 Ensembl 0.4 -23.0 -22985 0.4 MESTP1 AB755817 LAMA2
GH06J128963 Enhancer 0.2 Ensembl 0.3 -33.9 -33885 1 MESTP1 AB755817 LAMA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MESTP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MESTP1 Gene

Genomic Locations for MESTP1 Gene
chr6:128,927,756-128,930,216
(GRCh38/hg38)
Size:
2,461 bases
Orientation:
Minus strand
chr6:129,248,899-129,251,350
(GRCh37/hg19)
Size:
2,452 bases
Orientation:
Minus strand

Genomic View for MESTP1 Gene

Genes around MESTP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MESTP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MESTP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MESTP1 Gene

Proteins for MESTP1 Gene

Post-translational modifications for MESTP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MESTP1 Gene

Domains & Families for MESTP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MESTP1 Gene

Function for MESTP1 Gene

Phenotypes From GWAS Catalog for MESTP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MESTP1 Gene

Localization for MESTP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MESTP1 Gene

Pathways & Interactions for MESTP1 Gene

PathCards logo

SuperPathways for MESTP1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MESTP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MESTP1 Gene

Drugs & Compounds for MESTP1 Gene

No Compound Related Data Available

Transcripts for MESTP1 Gene

mRNA/cDNA for MESTP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MESTP1 Gene

No ASD Table

Relevant External Links for MESTP1 Gene

GeneLoc Exon Structure for
MESTP1

Expression for MESTP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MESTP1 Gene

mRNA differential expression in normal tissues according to GTEx for MESTP1 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.7) and Nerve - Tibial (x4.0).
genes like me logo Genes that share expression patterns with MESTP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MESTP1 Gene

Orthologs for MESTP1 Gene

Evolution for MESTP1 Gene

ENSEMBL:
Gene Tree for MESTP1 (if available)
TreeFam:
Gene Tree for MESTP1 (if available)

No data available for Orthologs for MESTP1 Gene

Paralogs for MESTP1 Gene

No data available for Paralogs for MESTP1 Gene

Variants for MESTP1 Gene

Additional Variant Information for MESTP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MESTP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MESTP1 Gene

Disorders for MESTP1 Gene

Additional Disease Information for MESTP1

Genetic Association Database
(GAD)

No disorders were found for MESTP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MESTP1 Gene

Publications for MESTP1 Gene

  1. Genome-wide association study of height and body mass index in Australian twin families. (PMID: 20397748) Liu JZ … McRae AF (Twin research and human genetics : the official journal of the International Society for Twin Studies 2010) 41 54

Products for MESTP1 Gene

Sources for MESTP1 Gene