Aliases for MELTF-AS1 Gene

Subcategory (RNA class) for MELTF-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MELTF-AS1 Gene

  • MELTF Antisense RNA 1 2 3 5
  • MELTF-AS1 2 5 165
  • MFI2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG037137.2 91
  • HSALNG0031988 164
  • AC068302.3 2
  • MFI2-AS1 3

External Ids for MELTF-AS1 Gene

Previous HGNC Symbols for MELTF-AS1 Gene

  • MFI2-AS1

Summaries for MELTF-AS1 Gene

GeneCards Summary for MELTF-AS1 Gene

MELTF-AS1 (MELTF Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MELTF-AS1 include Retinitis Pigmentosa.

Additional gene information for MELTF-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MELTF-AS1 Gene

Genomics for MELTF-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MELTF-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J197001 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +4.4 4368 4.2 SP1 CTCF BACH1 TARDBP LARP7 ZNF143 REST TCF12 POLR2A TRIM22 MELTF-AS1 lnc-PIGZ-2 UBXN7 LRCH3 SENP5 PIGZ ENSG00000214135 UBXN7-AS1 MELTF RPSAP69
GH03J196998 Enhancer 0.4 dbSUPER 600.7 +0.4 351 1.9 POLR2A ZNF507 ZNF664 ZNF579 MELTF-AS1 RPSAP30 ENSG00000214135 LRCH3 FYTTD1 NCBP2-AS1 RPL17P18 UBXN7-AS1 SLC51A MELTF
GH03J196999 Enhancer 0.2 Ensembl 600.7 -1.9 -1860 0.4 MELTF-AS1 RPSAP30 RPSAP69 PIGZ MELTF
GH03J197029 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE 12.6 +30.8 30804 4.2 CREB1 GATAD2A CTCF ZBTB33 HNRNPL PRDM10 ZNF629 TFE3 LEF1 IKZF1 MELTF lnc-DLG1-1-002 MELTF-AS1 NCBP2 NCBP2-AS1 DLG1 SENP5 NRROS piR-43107-228
GH03J196316 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 10 -681.4 -681426 2.9 ARHGAP35 CREB1 RFX1 LEF1 POLR2A BACH1 FOXA1 LARP7 PHF21A ZSCAN4 TCTEX1D2 ENSG00000272741 LOC107986031 TM4SF19-AS1 SDHAP1 SDHAP2 UBXN7 MUC20-OT1 RNU6ATAC24P RNF168
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MELTF-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MELTF-AS1 Gene

Genomic Locations for MELTF-AS1 Gene
chr3:196,999,460-197,004,745
(GRCh38/hg38)
Size:
5,286 bases
Orientation:
Plus strand
chr3:196,726,331-196,731,615
(GRCh37/hg19)
Size:
5,285 bases
Orientation:
Plus strand

Genomic View for MELTF-AS1 Gene

Genes around MELTF-AS1 on UCSC Golden Path with GeneCards custom track
MELTF-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MELTF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MELTF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MELTF-AS1 Gene

Proteins for MELTF-AS1 Gene

Post-translational modifications for MELTF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MELTF-AS1 Gene

Domains & Families for MELTF-AS1 Gene

Gene Families for MELTF-AS1 Gene

genes like me logo Genes that share domains with MELTF-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MELTF-AS1 Gene

Function for MELTF-AS1 Gene

Phenotypes From GWAS Catalog for MELTF-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MELTF-AS1 Gene

Localization for MELTF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MELTF-AS1 Gene

Pathways & Interactions for MELTF-AS1 Gene

PathCards logo

SuperPathways for MELTF-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MELTF-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MELTF-AS1 Gene

Drugs & Compounds for MELTF-AS1 Gene

No Compound Related Data Available

Transcripts for MELTF-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MELTF-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000009863C_9606 lncRNA 951 5

HGNC: 40373,

RefSeq: NR_038285,

Ensembl: ENST00000415244 (view in UCSC) ,

LncBook: HSALNT0067481,

NONCODE: NONHSAT094385.2,

URS000024B4C2_9606 lncRNA 356 4

Ensembl: ENST00000424769 (view in UCSC) ,

LncBook: HSALNT0067471,

LNCipedia: MELTF-AS1:17,

NONCODE: NONHSAT094376.2,

URS00002E9867_9606 lncRNA 306 4

Ensembl: ENST00000437064 (view in UCSC) ,

LncBook: HSALNT0067492,

LNCipedia: MELTF-AS1:19,

NONCODE: NONHSAT094390.2,

URS00000EFAAF_9606 lncRNA 204 3

Ensembl: ENST00000446695 (view in UCSC) ,

LncBook: HSALNT0067483,

LNCipedia: MELTF-AS1:18,

URS000030A297_9606 lncRNA 468 2

Ensembl: ENST00000414354 (view in UCSC) ,

LncBook: HSALNT0067493,

MELTF-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MELTF-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MELTF-AS1 Gene

No ASD Table

Relevant External Links for MELTF-AS1 Gene

GeneLoc Exon Structure for
MELTF-AS1

Expression for MELTF-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MELTF-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MELTF-AS1 Gene

Orthologs for MELTF-AS1 Gene

Evolution for MELTF-AS1 Gene

ENSEMBL:
Gene Tree for MELTF-AS1 (if available)
TreeFam:
Gene Tree for MELTF-AS1 (if available)

No data available for Orthologs for MELTF-AS1 Gene

Paralogs for MELTF-AS1 Gene

No data available for Paralogs for MELTF-AS1 Gene

Variants for MELTF-AS1 Gene

Additional dbSNP identifiers (rs#s) for MELTF-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MELTF-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv8855n54 CNV gain 21841781
dgv8856n54 CNV gain+loss 21841781
dgv8857n54 CNV loss 21841781
esv2763775 CNV gain+loss 21179565
esv29143 CNV loss 19812545
esv3599293 CNV gain 21293372
nsv1003135 CNV gain 25217958
nsv1073277 CNV deletion 25765185
nsv1144060 CNV deletion 24896259
nsv517987 CNV loss 19592680
nsv593106 CNV loss 21841781
nsv822421 CNV loss 20364138

Additional Variant Information for MELTF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MELTF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MELTF-AS1 Gene

Disorders for MELTF-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MELTF-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with MELTF-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MELTF-AS1 Gene

Publications for MELTF-AS1 Gene

  1. Overexpression of long non-coding RNA MFI2 promotes cell proliferation and suppresses apoptosis in human osteosarcoma. (PMID: 27513470) Yin Z … Li M (Oncology reports 2016) 2 3
  2. Knockdown of lncRNA MFI2-AS1 inhibits lipopolysaccharide-induced osteoarthritis progression by miR-130a-3p/TCF4. (PMID: 31678554) Luo X … Wang A (Life sciences 2020) 3
  3. Expression of long non-coding RNA MFI2-AS1 is a strong predictor of recurrence in sporadic localized clear-cell renal cell carcinoma. (PMID: 28819235) Flippot R … Malouf GG (Scientific reports 2017) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for MELTF-AS1 Gene

Sources for MELTF-AS1 Gene