Aliases for MEIS1-AS3 Gene

Subcategory (RNA class) for MEIS1-AS3 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MEIS1-AS3 Gene

  • MEIS1 Antisense RNA 3 2 3 5
  • MEIS1-AS3 2 5 165
  • MEIS1 Antisense RNA 3 (Non-Protein Coding) 2 3
  • NONHSAG028019.2 91
  • HSALNG0015581 164

External Ids for MEIS1-AS3 Gene

Previous GeneCards Identifiers for MEIS1-AS3 Gene

  • GC02M066655

Summaries for MEIS1-AS3 Gene

GeneCards Summary for MEIS1-AS3 Gene

MEIS1-AS3 (MEIS1 Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MEIS1-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MEIS1-AS3 Gene

Genomics for MEIS1-AS3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MEIS1-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J066430 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 626 -4.9 -4941 19.4 CEBPG CREB1 GATAD2A CTCF ZBTB33 ATF7 TEAD4 PRDM10 ZNF629 REST MEIS1-AS3 MEIS1 MEIS1-AS2 ETAA1
GH02J066424 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 25.6 +8.0 7982 3.4 ZSCAN4 EZH2 ZNF600 CEBPA SOX13 TCF7 FOXA2 ZBTB26 POLR2A JUND MEIS1-AS3 MEIS1 AB372660-003 SPRED2
GH02J066572 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.1 -144.4 -144417 11.5 RNF2 ARHGAP35 CEBPG GATAD2A CTCF PRDM10 ZNF512 IKZF1 ZNF692 FOXA1 LINC01798 MEIS1 MEIS1-AS2 MEIS1-AS3 piR-60985-052 ETAA1
GH02J066480 Enhancer 1.2 Ensembl ENCODE dbSUPER 17.9 -47.0 -46959 2.4 LEF1 IKZF1 JUND MTA2 PKNOX1 ZNF24 MTA1 REST BRD9 DPF2 MEIS1-AS3 MEIS1-AS2 MEIS1 lnc-SPRED2-19 ETAA1
GH02J066535 Enhancer 1.7 VISTA UCNEbase Ensembl ENCODE dbSUPER 11.3 -103.7 -103659 6.6 ZNF692 FOXA1 ZIC2 ZNF561 ARNT ZBTB44 ZNF10 CEBPB EZH2 OSR2 MEIS1 MEIS1-AS3 MEIS1-AS2 lnc-SPRED2-19 ETAA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MEIS1-AS3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MEIS1-AS3 Gene

Genomic Locations for MEIS1-AS3 Gene
chr2:66,420,814-66,434,242
(GRCh38/hg38)
Size:
13,429 bases
Orientation:
Minus strand
chr2:66,653,867-66,661,509
(GRCh37/hg19)
Size:
7,643 bases
Orientation:
Minus strand

Genomic View for MEIS1-AS3 Gene

Genes around MEIS1-AS3 on UCSC Golden Path with GeneCards custom track
MEIS1-AS3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MEIS1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEIS1-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEIS1-AS3 Gene

Proteins for MEIS1-AS3 Gene

Post-translational modifications for MEIS1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEIS1-AS3 Gene

Domains & Families for MEIS1-AS3 Gene

Gene Families for MEIS1-AS3 Gene

genes like me logo Genes that share domains with MEIS1-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MEIS1-AS3 Gene

Function for MEIS1-AS3 Gene

Phenotypes From GWAS Catalog for MEIS1-AS3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEIS1-AS3 Gene

Localization for MEIS1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MEIS1-AS3 Gene

Pathways & Interactions for MEIS1-AS3 Gene

PathCards logo

SuperPathways for MEIS1-AS3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MEIS1-AS3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MEIS1-AS3 Gene

Drugs & Compounds for MEIS1-AS3 Gene

No Compound Related Data Available

Transcripts for MEIS1-AS3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MEIS1-AS3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A690_9606 lncRNA 4099 2

HGNC: 40369,

RefSeq: NR_046438,

URS00001BEAE3_9606 lncRNA 707 2

Ensembl: ENST00000454167 (view in UCSC) ,

LNCipedia: MEIS1-AS3:1,

URS00009BBF55_9606 lncRNA 4099 2

LNCipedia: MEIS1-AS3:2,

NONCODE: NONHSAT071222.2,

URS00009B4EFA_9606 lncRNA 707 2

LncBook: HSALNT0033036,

NONCODE: NONHSAT184788.1,

URS0000D5C1E7_9606 lncRNA 515 2

LncBook: HSALNT0033037,

LNCipedia: MEIS1-AS3:7,

MEIS1-AS3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MEIS1-AS3 Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MEIS1-AS3 Gene

No ASD Table

Relevant External Links for MEIS1-AS3 Gene

GeneLoc Exon Structure for
MEIS1-AS3

Expression for MEIS1-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MEIS1-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for MEIS1-AS3 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.7), Cervix - Ectocervix (x5.2), Cervix - Endocervix (x5.0), and Esophagus - Muscularis (x4.2).

SOURCE GeneReport for Unigene cluster for MEIS1-AS3 Gene:

Hs.526753
genes like me logo Genes that share expression patterns with MEIS1-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MEIS1-AS3 Gene

Orthologs for MEIS1-AS3 Gene

Evolution for MEIS1-AS3 Gene

ENSEMBL:
Gene Tree for MEIS1-AS3 (if available)
TreeFam:
Gene Tree for MEIS1-AS3 (if available)

No data available for Orthologs for MEIS1-AS3 Gene

Paralogs for MEIS1-AS3 Gene

No data available for Paralogs for MEIS1-AS3 Gene

Variants for MEIS1-AS3 Gene

Additional dbSNP identifiers (rs#s) for MEIS1-AS3 Gene

Structural Variations from Database of Genomic Variants (DGV) for MEIS1-AS3 Gene

Variant ID Type Subtype PubMed ID
esv1226948 CNV insertion 17803354

Additional Variant Information for MEIS1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MEIS1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MEIS1-AS3 Gene

Disorders for MEIS1-AS3 Gene

Additional Disease Information for MEIS1-AS3

No disorders were found for MEIS1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEIS1-AS3 Gene

Publications for MEIS1-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for MEIS1-AS3 Gene

Sources for MEIS1-AS3 Gene