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MEIS1-AS3 Gene(RNA Gene)

MEIS1 Antisense RNA 3

GCID:
GC02M066423
GIFtS:
16
Genes Participants
UDN Logo

Aliases for MEIS1-AS3 Gene

Subcategory (RNA class) for MEIS1-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MEIS1-AS3 Gene

  • MEIS1 Antisense RNA 3 2 3 5
  • MEIS1 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MEIS1-AS3 Gene

Previous GeneCards Identifiers for MEIS1-AS3 Gene

  • GC02M066655

Summaries for MEIS1-AS3 Gene

GeneCards Summary for MEIS1-AS3 Gene

MEIS1-AS3 (MEIS1 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MEIS1-AS3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEIS1-AS3 Gene

Genomics for MEIS1-AS3 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for MEIS1-AS3 Gene

Promoters and enhancers for MEIS1-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02I066430 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 25.8 -6.2 -6248 18.4 PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B MEIS1 ETAA1 MEIS1-AS3 MEIS1-AS2
GH02I066424 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 25.6 +7.2 7210 3.4 SOX13 FOXA2 SAP130 MLX SUZ12 ZSCAN4 SIN3A ZNF664 E2F1 POLR2A MEIS1-AS3 MEIS1 LINC01873
GH02I066572 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -145.2 -145189 11.5 PKNOX1 FOXA2 ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 ARID2 ZNF143 MEIS1 MEIS1-AS2 MEIS1-AS3 LINC01798 LINC01797
GH02I066568 Enhancer 1.4 UCNEbase ENCODE dbSUPER 12.7 -136.0 -136033 2 HDGF PKNOX1 FEZF1 BMI1 ZNF366 SCRT2 ZNF362 USF2 ZEB2 ZNF843 MEIS1 MEIS1-AS3 MEIS1-AS2 GC02M066566 LINC01798
GH02I066535 Enhancer 1.5 VISTA UCNEbase dbSUPER 11.3 -103.2 -103200 2.6 ARNT ZNF449 INSM2 ZNF384 FEZF1 ZIC2 BCL11B ZNF213 GLI2 EZH2 MEIS1 MEIS1-AS3 MEIS1-AS2 GC02M066566 GC02P066470
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MEIS1-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MEIS1-AS3 Gene

Genomic Locations for MEIS1-AS3 Gene
chr2:66,423,342-66,433,470
(GRCh38/hg38)
Size:
10,129 bases
Orientation:
Minus strand
chr2:66,653,867-66,661,509
(GRCh37/hg19)

Genomic View for MEIS1-AS3 Gene

Genes around MEIS1-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEIS1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEIS1-AS3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MEIS1-AS3 Gene

Proteins for MEIS1-AS3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MEIS1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEIS1-AS3 Gene

Domains & Families for MEIS1-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MEIS1-AS3 Gene

Function for MEIS1-AS3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MEIS1-AS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEIS1-AS3 Gene

Localization for MEIS1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MEIS1-AS3 Gene

Pathways & Interactions for MEIS1-AS3 Gene

SuperPathways for MEIS1-AS3 Gene

PathCards logo More details on SuperPathways for MEIS1-AS3
No Data Available

Interacting Proteins for MEIS1-AS3 Gene

Gene Ontology (GO) - Biological Process for MEIS1-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MEIS1-AS3 Gene

Drugs & Compounds for MEIS1-AS3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MEIS1-AS3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MEIS1-AS3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MEIS1-AS3 Gene

MEIS1 antisense RNA 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MEIS1-AS3 Gene

No ASD Table

Relevant External Links for MEIS1-AS3 Gene

GeneLoc Exon Structure for
MEIS1-AS3
ECgene alternative splicing isoforms for
MEIS1-AS3

Expression for MEIS1-AS3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MEIS1-AS3 Gene

mRNA expression in normal human tissues for MEIS1-AS3 Gene
mRNA expression by GTEx for MEIS1-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for MEIS1-AS3 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.7), Cervix - Ectocervix (x5.2), Cervix - Endocervix (x5.0), and Esophagus - Muscularis (x4.2).

SOURCE GeneReport for Unigene cluster for MEIS1-AS3 Gene:

Hs.526753
genes like me logo Genes that share expression patterns with MEIS1-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MEIS1-AS3 Gene

Orthologs for MEIS1-AS3 Gene

Evolution for MEIS1-AS3 Gene

ENSEMBL:
Gene Tree for MEIS1-AS3 (if available)
TreeFam:
Gene Tree for MEIS1-AS3 (if available)

No data available for Orthologs for MEIS1-AS3 Gene

Paralogs for MEIS1-AS3 Gene

No data available for Paralogs for MEIS1-AS3 Gene

Variants for MEIS1-AS3 Gene

Sequence variations from dbSNP and Humsavar for MEIS1-AS3 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000160593 -- 66,425,724(-) C/T non_coding_transcript_variant
rs1000223855 -- 66,428,351(-) G/A/T intron_variant
rs1000295236 -- 66,431,926(-) C/T intron_variant
rs1000437149 -- 66,431,141(-) G/A intron_variant
rs1001211821 -- 66,432,193(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MEIS1-AS3 Gene

Variant ID Type Subtype PubMed ID
esv1226948 CNV insertion 17803354

Additional Variant Information for MEIS1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MEIS1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEIS1-AS3 Gene

Disorders for MEIS1-AS3 Gene

Additional Disease Information for MEIS1-AS3

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MEIS1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEIS1-AS3 Gene

Publications for MEIS1-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for MEIS1-AS3 Gene

Sources for MEIS1-AS3 Gene

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