Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MEG9 Gene

Subcategory (RNA class) for MEG9 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for MEG9 Gene

  • Maternally Expressed 9 2 3
  • Maternally Expressed 9 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 584 2 3
  • LINC00584 3

External Ids for MEG9 Gene

Previous GeneCards Identifiers for MEG9 Gene

  • GC14P101754
  • GC14P101847
  • GC14P101988
  • GC14P102187
  • GC14P101278
  • GC14P101898
  • GC14P102212
  • GC14P102378
  • GC14P102558
  • GC14P102730
  • GC14P102900
  • GC14P103076

Summaries for MEG9 Gene

GeneCards Summary for MEG9 Gene

MEG9 (Maternally Expressed 9) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MEG9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEG9 Gene

Genomics for MEG9 Gene

GeneHancer (GH) Regulatory Elements for MEG9 Gene

Promoters and enhancers for MEG9 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J101063 Enhancer 0.3 ENCODE 650.7 -0.5 -469 0.9 CTCF GC14P103350 MEG9 MIR541 MIR412 MIR409 MIR377 MIR369 GC14M101064 GC14P103369 GC14P103330
GH14J100371 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.3 -689.2 -689246 6.5 CLOCK MLX DMAP1 IRF4 YY1 E2F8 ZNF143 ZNF548 SP3 NFYC WARS WDR25 SLC25A29 CCNK MEG9 YY1 GC14P100386
GH14J101705 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +643.4 643359 3.8 PKNOX1 ATF1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ETS1 POLR2B PPP2R5C MEG9 RPL26P4 ENSG00000258919 LINC00239 WDR20 LINC02320
GH14J101070 Enhancer 1.2 Ensembl ENCODE 13.7 +9.2 9208 4.9 ARNT NEUROD1 SIN3A ZNF2 BRCA1 GLIS2 ATF7 FOS DEK REST GC14P103460 MEG9 LOC105370670 GC14P103426 GC14M101071
GH14J100657 Enhancer 1.4 Ensembl ENCODE dbSUPER 9.7 -399.6 -399640 13.4 ATF1 FOXA2 ARID4B DMAP1 ZNF2 ZNF48 ZNF143 ATF7 FOS RXRA LOC105370667 DLK1 WARS WDR25 BEGAIN MEG9 MIR493 MIR337 MIR127 MIR431
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MEG9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MEG9 Gene

Genomic Locations for MEG9 Gene
8,787 bases
Plus strand
3,027 bases
Plus strand

Genomic View for MEG9 Gene

Genes around MEG9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEG9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEG9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEG9 Gene

Proteins for MEG9 Gene

Post-translational modifications for MEG9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEG9 Gene

Domains & Families for MEG9 Gene

Gene Families for MEG9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MEG9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MEG9 Gene

Function for MEG9 Gene

Phenotypes From GWAS Catalog for MEG9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEG9 Gene

Localization for MEG9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MEG9 Gene

Pathways & Interactions for MEG9 Gene

No Data Available

Interacting Proteins for MEG9 Gene

Gene Ontology (GO) - Biological Process for MEG9 Gene


No data available for Pathways by source and SIGNOR curated interactions for MEG9 Gene

Drugs & Compounds for MEG9 Gene

No Compound Related Data Available

Transcripts for MEG9 Gene

mRNA/cDNA for MEG9 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Unigene Clusters for MEG9 Gene

Maternally expressed 9 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MEG9 Gene

No ASD Table

Relevant External Links for MEG9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MEG9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MEG9 Gene

mRNA differential expression in normal tissues according to GTEx for MEG9 Gene

This gene is overexpressed in Pituitary (x9.6), Ovary (x5.5), and Adrenal Gland (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of MEG9 Gene:


SOURCE GeneReport for Unigene cluster for MEG9 Gene:

genes like me logo Genes that share expression patterns with MEG9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MEG9 Gene

Orthologs for MEG9 Gene

Evolution for MEG9 Gene

Gene Tree for MEG9 (if available)
Gene Tree for MEG9 (if available)

No data available for Orthologs for MEG9 Gene

Paralogs for MEG9 Gene

No data available for Paralogs for MEG9 Gene

Variants for MEG9 Gene

Sequence variations from dbSNP and Humsavar for MEG9 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000600031 -- 101,069,505(+) C/T upstream_transcript_variant
rs1001628006 -- 101,069,116(+) C/A upstream_transcript_variant
rs1001722958 -- 101,068,905(+) T/A upstream_transcript_variant
rs1001838695 -- 101,070,712(+) C/T non_coding_transcript_variant
rs1002313916 -- 101,070,313(+) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MEG9 Gene

Variant ID Type Subtype PubMed ID
nsv565860 CNV gain 21841781
nsv565859 CNV gain 21841781
nsv509551 CNV insertion 20534489
nsv1041303 CNV gain 25217958
nsv1040993 CNV gain 25217958

Additional Variant Information for MEG9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEG9 Gene

Disorders for MEG9 Gene

Additional Disease Information for MEG9

No disorders were found for MEG9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEG9 Gene

Publications for MEG9 Gene

  1. At least ten genes define the imprinted Dlk1-Dio3 cluster on mouse chromosome 12qF1. (PMID: 19194500) Hagan JP … Croce CM (PloS one 2009) 2 3 58
  2. Identification of a candidate gene for astigmatism. (PMID: 23322567) Lopes MC … Hammond CJ (Investigative ophthalmology & visual science 2013) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for MEG9 Gene

Sources for MEG9 Gene

Loading form....