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Aliases for MEF2C-AS1 Gene

Subcategory (RNA class) for MEF2C-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for MEF2C-AS1 Gene

  • MEF2C Antisense RNA 1 2 3 5
  • CTC-454M9.1 3

External Ids for MEF2C-AS1 Gene

Previous GeneCards Identifiers for MEF2C-AS1 Gene

  • GC05P088189
  • GC05P088192

Summaries for MEF2C-AS1 Gene

GeneCards Summary for MEF2C-AS1 Gene

MEF2C-AS1 (MEF2C Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MEF2C-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEF2C-AS1 Gene

Genomics for MEF2C-AS1 Gene

GeneHancer (GH) Regulatory Elements for MEF2C-AS1 Gene

Promoters and enhancers for MEF2C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J088878 Promoter/Enhancer 3.3 VISTA UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 658.4 +1.8 1809 12.3 PKNOX1 SMAD1 ARNT FEZF1 ZNF2 POLR2B ZNF766 ZNF143 FOS KLF13 MEF2C-AS1 MEF2C TMEM161B ENSG00000250831 PIR46355
GH05J088822 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -54.6 -54576 12.6 HDGF FOXA2 PKNOX1 SMAD1 FEZF1 ZNF2 IRF4 YY1 JUNB MEF2D TMEM161B MEF2C-AS1 MEF2C ENSG00000250377
GH05J088671 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.2 -208.4 -208396 7 ATF1 ARNT ZNF133 NEUROD1 SIN3A FEZF1 ZNF2 YY1 GLIS2 ZNF213 MEF2C-AS2 TMEM161B MEF2C MEF2C-AS1 MIR9-2 LINC00461
GH05J089300 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 4.4 +418.8 418810 2.9 PKNOX1 STAT5A BMI1 BATF KLF5 IRF4 ATF7 ETV6 BCLAF1 IKZF2 MEF2C-AS1 MEF2C LOC105379074 GC05P089136
GH05J088730 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4 -148.9 -148857 8.9 PKNOX1 SMAD1 ZNF133 IRF4 TCF12 ZNF143 ATF7 RUNX3 RXRA JUNB MEF2C ENSG00000250377 MEF2C-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MEF2C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MEF2C-AS1 Gene

Genomic Locations for MEF2C-AS1 Gene
chr5:88,883,328-89,466,398
(GRCh38/hg38)
Size:
583,071 bases
Orientation:
Plus strand
chr5:88,179,145-88,762,215
(GRCh37/hg19)
Size:
583,071 bases
Orientation:
Plus strand

Genomic View for MEF2C-AS1 Gene

Genes around MEF2C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEF2C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEF2C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEF2C-AS1 Gene

Proteins for MEF2C-AS1 Gene

Post-translational modifications for MEF2C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEF2C-AS1 Gene

Domains & Families for MEF2C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MEF2C-AS1 Gene

Function for MEF2C-AS1 Gene

Phenotypes From GWAS Catalog for MEF2C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEF2C-AS1 Gene

Localization for MEF2C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MEF2C-AS1 Gene

Pathways & Interactions for MEF2C-AS1 Gene

SuperPathways for MEF2C-AS1 Gene

No Data Available

Interacting Proteins for MEF2C-AS1 Gene

Gene Ontology (GO) - Biological Process for MEF2C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MEF2C-AS1 Gene

Drugs & Compounds for MEF2C-AS1 Gene

No Compound Related Data Available

Transcripts for MEF2C-AS1 Gene

mRNA/cDNA for MEF2C-AS1 Gene

(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(24) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MEF2C-AS1 Gene

No ASD Table

Relevant External Links for MEF2C-AS1 Gene

GeneLoc Exon Structure for
MEF2C-AS1
ECgene alternative splicing isoforms for
MEF2C-AS1

Expression for MEF2C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MEF2C-AS1 Gene

genes like me logo Genes that share expression patterns with MEF2C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MEF2C-AS1 Gene

Orthologs for MEF2C-AS1 Gene

Evolution for MEF2C-AS1 Gene

ENSEMBL:
Gene Tree for MEF2C-AS1 (if available)
TreeFam:
Gene Tree for MEF2C-AS1 (if available)

No data available for Orthologs for MEF2C-AS1 Gene

Paralogs for MEF2C-AS1 Gene

No data available for Paralogs for MEF2C-AS1 Gene

Variants for MEF2C-AS1 Gene

Sequence variations from dbSNP and Humsavar for MEF2C-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs144197632 uncertain-significance, Intellectual Disability, Stereotypic Movements, Epilepsy, and/or Cerebral Malformations 88,883,254(+) GGGGGGGGG/GGGGGGGG/GGGGGGGGGG upstream_transcript_variant
rs200560914 uncertain-significance, Intellectual Disability, Stereotypic Movements, Epilepsy, and/or Cerebral Malformations 88,883,019(+) G/A upstream_transcript_variant
rs529548312 likely-benign, Intellectual Disability, Stereotypic Movements, Epilepsy, and/or Cerebral Malformations 88,883,325(+) G/A upstream_transcript_variant
rs546767730 uncertain-significance, Intellectual Disability, Stereotypic Movements, Epilepsy, and/or Cerebral Malformations 88,883,222(+) T/A/C upstream_transcript_variant
rs560769479 likely-benign, Intellectual Disability, Stereotypic Movements, Epilepsy, and/or Cerebral Malformations 88,883,262(+) G/A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MEF2C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3308122 CNV mobile element insertion 20981092
esv3381980 CNV insertion 20981092
esv3397602 CNV duplication 20981092
esv3424791 CNV insertion 20981092
esv3605741 CNV loss 21293372
nsv1074317 CNV deletion 25765185
nsv471022 CNV loss 18288195
nsv473063 CNV novel sequence insertion 20440878
nsv473247 CNV novel sequence insertion 20440878
nsv527694 CNV loss 19592680
nsv830386 CNV gain 17160897
nsv980696 CNV duplication 23825009

Additional Variant Information for MEF2C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MEF2C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEF2C-AS1 Gene

Disorders for MEF2C-AS1 Gene

Additional Disease Information for MEF2C-AS1

No disorders were found for MEF2C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEF2C-AS1 Gene

Publications for MEF2C-AS1 Gene

  1. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao WJ … Zhang ZY (World journal of gastroenterology 2013) 2 3 58
  2. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila JL … Boerwinkle E (The pharmacogenomics journal 2014) 3 58
  3. Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. (PMID: 24249740) Zhang L … Deng HW (Human molecular genetics 2014) 3 58
  4. Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease. (PMID: 24162737) Lambert JC … Amouyel P (Nature genetics 2013) 3 58
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for MEF2C-AS1 Gene

Sources for MEF2C-AS1 Gene

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