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Aliases for MED4-AS1 Gene

Subcategory (RNA class) for MED4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for MED4-AS1 Gene

  • MED4 Antisense RNA 1 2 3 5
  • MED4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • MED4 Antisense RNA (Non-Protein Coding) 2 3
  • MED4-AS 3

External Ids for MED4-AS1 Gene

Previous HGNC Symbols for MED4-AS1 Gene

  • MED4-AS

Previous GeneCards Identifiers for MED4-AS1 Gene

  • GC00U931333
  • GC13P048652

Summaries for MED4-AS1 Gene

GeneCards Summary for MED4-AS1 Gene

MED4-AS1 (MED4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MED4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MED4-AS1 Gene

Genomics for MED4-AS1 Gene

GeneHancer (GH) Regulatory Elements for MED4-AS1 Gene

Promoters and enhancers for MED4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J048078 Enhancer 0.7 ENCODE 600.7 +1.2 1203 0.2 CTCF RELA IKZF1 IKZF2 TRIM22 CBFB DPF2 EED RUNX3 BCLAF1 MED4-AS1 MED4
GH13J048093 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.3 +17.3 17264 3.2 ZFX SP1 CC2D1A CTCF ELF3 MNT POLR2A CEBPG GTF2F1 ZNF687 MED4 SUCLA2 PPP1R26P1 MED4-AS1 ITM2B
GH13J047999 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.2 -76.0 -75973 3.9 SP1 ZNF652 ZFX ELF3 NKRF POLR2A MLLT1 ZNF384 ZNF24 ZBTB7A SUCLA2 SUCLA2-AS1 MED4 MED4-AS1 LINC00562
GH13J048109 Enhancer 0.8 Ensembl ENCODE 24.7 +33.8 33764 2.6 SOX13 TCF7 FOXA2 TEAD1 NR2F2 ZNF614 JUN BCL6 NFIA SMAD4 MED4-AS1 MED4 POLR2KP2 LOC105370198
GH13J048142 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +66.6 66564 5 SP1 IKZF1 ATF7 SOX6 RUNX3 CREB1 NR2F1 NR2F2 RAD21 TCF12 ITM2B MED4-AS1 SUCLA2 MED4 RCBTB2 LPAR6 RB1 POLR2KP2 LOC105370198
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MED4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MED4-AS1 Gene

Genomic Locations for MED4-AS1 Gene
chr13:48,077,137-48,079,993
(GRCh38/hg38)
Size:
2,857 bases
Orientation:
Plus strand
chr13:48,651,273-48,654,127
(GRCh37/hg19)
Size:
2,855 bases
Orientation:
Plus strand

Genomic View for MED4-AS1 Gene

Genes around MED4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MED4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MED4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MED4-AS1 Gene

Proteins for MED4-AS1 Gene

Post-translational modifications for MED4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MED4-AS1 Gene

Domains & Families for MED4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MED4-AS1 Gene

Function for MED4-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MED4-AS1 Gene

Localization for MED4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MED4-AS1 Gene

Pathways & Interactions for MED4-AS1 Gene

PathCards logo

SuperPathways for MED4-AS1 Gene

No Data Available

Interacting Proteins for MED4-AS1 Gene

Gene Ontology (GO) - Biological Process for MED4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MED4-AS1 Gene

Drugs & Compounds for MED4-AS1 Gene

No Compound Related Data Available

Transcripts for MED4-AS1 Gene

mRNA/cDNA for MED4-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for MED4-AS1 Gene

MED4 antisense RNA 1:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MED4-AS1 Gene

No ASD Table

Relevant External Links for MED4-AS1 Gene

GeneLoc Exon Structure for
MED4-AS1
ECgene alternative splicing isoforms for
MED4-AS1

Expression for MED4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MED4-AS1 Gene

SOURCE GeneReport for Unigene cluster for MED4-AS1 Gene:

Hs.616241
genes like me logo Genes that share expression patterns with MED4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MED4-AS1 Gene

Orthologs for MED4-AS1 Gene

Evolution for MED4-AS1 Gene

ENSEMBL:
Gene Tree for MED4-AS1 (if available)
TreeFam:
Gene Tree for MED4-AS1 (if available)

No data available for Orthologs for MED4-AS1 Gene

Paralogs for MED4-AS1 Gene

No data available for Paralogs for MED4-AS1 Gene

Variants for MED4-AS1 Gene

Sequence variations from dbSNP and Humsavar for MED4-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000586458 -- 48,080,320(+) C/T downstream_transcript_variant
rs1000586691 -- 48,077,402(+) T/G intron_variant
rs1002096498 -- 48,080,290(+) G/A downstream_transcript_variant
rs1002249498 -- 48,075,778(+) T/C upstream_transcript_variant
rs1003137287 -- 48,079,092(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MED4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832601 CNV gain 17160897

Additional Variant Information for MED4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MED4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MED4-AS1 Gene

Disorders for MED4-AS1 Gene

Additional Disease Information for MED4-AS1

No disorders were found for MED4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MED4-AS1 Gene

Publications for MED4-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for MED4-AS1 Gene

Sources for MED4-AS1 Gene

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