Aliases for MED4-AS1 Gene

Subcategory (RNA class) for MED4-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for MED4-AS1 Gene

  • MED4 Antisense RNA 1 2 3 5
  • MED4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • MED4 Antisense RNA (Non-Protein Coding) 2 3
  • MED4-AS1 2 5
  • NONHSAG013473.2 91
  • HSALNG0096958 164
  • MED4-AS 3

External Ids for MED4-AS1 Gene

Previous HGNC Symbols for MED4-AS1 Gene

  • MED4-AS

Previous GeneCards Identifiers for MED4-AS1 Gene

  • GC00U931333
  • GC13P048652

Summaries for MED4-AS1 Gene

GeneCards Summary for MED4-AS1 Gene

MED4-AS1 (MED4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MED4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MED4-AS1 Gene

Genomics for MED4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MED4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J048066 Enhancer 0.5 ENCODE 608.4 +1.7 1720 1.3 ZNF561 RBM22 ZNF143 HLF SPI1 MED4-AS1 MED4 SUCLA2
GH13J048093 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 13.2 +29.3 29259 3 SP1 CREB1 GATAD2A CTCF ZBTB33 ZNF629 NFKBIZ ZNF692 POLR2A RCOR2 MED4 SUCLA2 PPP1R26P1 MED4-AS1 ITM2B
GH13J047999 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.2 -64.1 -64054 4.3 GATAD2A KDM1A POLR2A RCOR2 ZNF7 LARP7 RBFOX2 RXRB SMAD5 RCOR1 SUCLA2 SUCLA2-AS1 lnc-MED4-2 piR-34822-078 MED4 MED4-AS1 NUDT15
GH13J048109 Enhancer 0.8 Ensembl ENCODE 24.6 +45.6 45583 2.8 FOXA1 GABPA PBX2 SOX13 TCF7 FOXA2 TEAD1 NR2F2 FOSL2 SMAD4 MED4-AS1 MED4 piR-61945-122 RF00017-1423 LOC105370198 ITM2B
GH13J048096 Enhancer 0.9 Ensembl ENCODE 18.7 +31.6 31583 1.6 GATAD2A REST SOX13 ZNF7 IRF2 SP1 KMT2B FOXA2 ZKSCAN8 ATF3 MED4 MED4-AS1 ITM2B SUCLA2 RF00017-1423
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MED4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MED4-AS1 Gene

Genomic Locations for MED4-AS1 Gene
chr13:48,065,018-48,080,233
(GRCh38/hg38)
Size:
15,216 bases
Orientation:
Plus strand
chr13:48,651,273-48,654,127
(GRCh37/hg19)
Size:
2,855 bases
Orientation:
Plus strand

Genomic View for MED4-AS1 Gene

Genes around MED4-AS1 on UCSC Golden Path with GeneCards custom track
MED4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MED4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MED4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MED4-AS1 Gene

Proteins for MED4-AS1 Gene

Post-translational modifications for MED4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MED4-AS1 Gene

Domains & Families for MED4-AS1 Gene

Gene Families for MED4-AS1 Gene

genes like me logo Genes that share domains with MED4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MED4-AS1 Gene

Function for MED4-AS1 Gene

Phenotypes From GWAS Catalog for MED4-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MED4-AS1 Gene

Localization for MED4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MED4-AS1 Gene

Pathways & Interactions for MED4-AS1 Gene

PathCards logo

SuperPathways for MED4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MED4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MED4-AS1 Gene

Drugs & Compounds for MED4-AS1 Gene

No Compound Related Data Available

Transcripts for MED4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MED4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A5E9_9606 lncRNA 544 4

HGNC: 39213,

RefSeq: NR_046511,

LncBook: HSALNT0201466,

NONCODE: NONHSAT033699.2,

URS00005E3493_9606 lncRNA 542 2

Ensembl: ENST00000422483 (view in UCSC) ,

LncBook: HSALNT0201465,

URS00009B1C84_9606 lncRNA 542 2

LncBook: HSALNT0201464,

NONCODE: NONHSAT165684.1,

URS0000EACAB8_9606 lncRNA 7674 1

LncBook: HSALNT0201459,

MED4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MED4-AS1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MED4-AS1 Gene

No ASD Table

Relevant External Links for MED4-AS1 Gene

GeneLoc Exon Structure for
MED4-AS1

Expression for MED4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MED4-AS1 Gene

SOURCE GeneReport for Unigene cluster for MED4-AS1 Gene:

Hs.616241
genes like me logo Genes that share expression patterns with MED4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MED4-AS1 Gene

Orthologs for MED4-AS1 Gene

Evolution for MED4-AS1 Gene

ENSEMBL:
Gene Tree for MED4-AS1 (if available)
TreeFam:
Gene Tree for MED4-AS1 (if available)

No data available for Orthologs for MED4-AS1 Gene

Paralogs for MED4-AS1 Gene

No data available for Paralogs for MED4-AS1 Gene

Variants for MED4-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MED4-AS1 Gene

SNP ID Clinical significance and condition Chr 13 pos Variation AA Info Type
773271 Benign: not provided 48,077,193(+) A/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for MED4-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MED4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832601 CNV gain 17160897

Additional Variant Information for MED4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MED4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MED4-AS1 Gene

Disorders for MED4-AS1 Gene

Additional Disease Information for MED4-AS1

No disorders were found for MED4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MED4-AS1 Gene

Publications for MED4-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for MED4-AS1 Gene

Sources for MED4-AS1 Gene