Aliases for MED15P9 Gene

Aliases for MED15P9 Gene

  • Mediator Complex Subunit 15 Pseudogene 9 2 3 5
  • CCDC74B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Mediator Complex Subunit 15 Pseudogene 2 2 3
  • CCDC74B Antisense RNA 1 2
  • CCDC74B-AS1 3
  • MED15P2 3
  • MED15P9 5

External Ids for MED15P9 Gene

Previous HGNC Symbols for MED15P9 Gene

  • CCDC74B-AS1
  • MED15P2

Previous GeneCards Identifiers for MED15P9 Gene

  • GC02P130890

Summaries for MED15P9 Gene

GeneCards Summary for MED15P9 Gene

MED15P9 (Mediator Complex Subunit 15 Pseudogene 9) is a Pseudogene.

Additional gene information for MED15P9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MED15P9 Gene

Genomics for MED15P9 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MED15P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J130130 Promoter 1.1 EPDnew Ensembl 250.7 +0.1 80 4.2 IKZF1 SAP130 THRB MLLT1 NFYC CTCF ARID4B ZNF512 MNT RNF2 POTEF MED15P9 lnc-MZT2B-1 MZT2B RAB6C-AS1 CCDC74B lnc-CCDC74B-1
GH02J130138 Enhancer 0.2 Ensembl 0.4 +9.6 9580 0.8 TUBA3E RAB6C-AS1 lnc-CCDC74B-1 CCDC74B MED15P9 lnc-MZT2B-1 POTEF
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MED15P9 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MED15P9 Gene

Latest Assembly
chr2:130,129,621-130,139,417
(GRCh38/hg38)
Size:
9,797 bases
Orientation:
Plus strand

Previous Assembly
chr2:130,887,196-130,896,986
(GRCh37/hg19 by Entrez Gene)
Size:
9,791 bases
Orientation:
Plus strand

chr2:130,887,194-130,896,990
(GRCh37/hg19 by Ensembl)
Size:
9,797 bases
Orientation:
Plus strand

Genomic View for MED15P9 Gene

Genes around MED15P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MED15P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MED15P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MED15P9 Gene

Proteins for MED15P9 Gene

Post-translational modifications for MED15P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MED15P9 Gene

Domains & Families for MED15P9 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MED15P9 Gene

Function for MED15P9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MED15P9 Gene

Localization for MED15P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MED15P9 Gene

Pathways & Interactions for MED15P9 Gene

PathCards logo

SuperPathways for MED15P9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MED15P9 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MED15P9 Gene

Drugs & Compounds for MED15P9 Gene

No Compound Related Data Available

Transcripts for MED15P9 Gene

mRNA/cDNA for MED15P9 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MED15P9 Gene

No ASD Table

Relevant External Links for MED15P9 Gene

GeneLoc Exon Structure for
MED15P9

Expression for MED15P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MED15P9 Gene

mRNA differential expression in normal tissues according to GTEx for MED15P9 Gene

This gene is overexpressed in Testis (x25.1) and Pituitary (x5.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MED15P9

genes like me logo Genes that share expression patterns with MED15P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MED15P9 Gene

Orthologs for MED15P9 Gene

Evolution for MED15P9 Gene

ENSEMBL:
Gene Tree for MED15P9 (if available)
TreeFam:
Gene Tree for MED15P9 (if available)
Alliance of Genome Resources:
Additional Orthologs for MED15P9

No data available for Orthologs for MED15P9 Gene

Paralogs for MED15P9 Gene

No data available for Paralogs for MED15P9 Gene

Variants for MED15P9 Gene

Structural Variations from Database of Genomic Variants (DGV) for MED15P9 Gene

Variant ID Type Subtype PubMed ID
dgv2032n106 OTHER inversion 24896259
dgv4072n100 CNV loss 25217958
dgv4073n100 CNV gain 25217958
esv2751826 CNV gain 17911159
esv2759092 CNV gain+loss 17122850
esv2760631 CNV gain+loss 21179565
esv2763387 CNV loss 21179565
esv3584065 CNV loss 25503493
esv3584069 CNV loss 25503493
esv3893326 CNV gain 25118596
nsv1001337 CNV loss 25217958
nsv1004301 CNV loss 25217958
nsv1008911 CNV gain 25217958
nsv1011360 CNV loss 25217958
nsv428403 CNV loss 18775914
nsv459274 CNV loss 19166990
nsv520559 CNV gain+loss 19592680
nsv583046 CNV loss 21841781
nsv583113 CNV gain 21841781
nsv7327 OTHER inversion 18451855
nsv821629 CNV loss 15273396
nsv834375 CNV loss 17160897
nsv953161 CNV deletion 24416366
nsv953162 CNV deletion 24416366
nsv961882 CNV duplication 23825009
nsv998333 CNV gain+loss 25217958

Additional Variant Information for MED15P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MED15P9
Leiden Open Variation Database (LOVD)
MED15P9

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for MED15P9 Gene

Disorders for MED15P9 Gene

Additional Disease Information for MED15P9

No disorders were found for MED15P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MED15P9 Gene

Publications for MED15P9 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for MED15P9 Gene

Sources for MED15P9 Gene