Aliases for MDS2 Gene

Subcategory (RNA class) for MDS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MDS2 Gene

  • Myelodysplastic Syndrome 2 Translocation Associated 2 3 5
  • Myelodysplastic Syndrome 2 Translocation-Associated Protein 3 4
  • NONHSAG000662.2 91
  • HSALNG0001643 164
  • Lnc-RPL11-1 165
  • MDS2 5

External Ids for MDS2 Gene

Previous GeneCards Identifiers for MDS2 Gene

  • GC01U990489
  • GC01P023024
  • GC01P023435
  • GC01P023827
  • GC01P023907
  • GC01P022203

Summaries for MDS2 Gene

GeneCards Summary for MDS2 Gene

MDS2 (Myelodysplastic Syndrome 2 Translocation Associated) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MDS2 include Myelodysplastic Syndrome and Myasthenic Syndrome, Congenital, 2C, Associated With Acetylcholine Receptor Deficiency.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MDS2 Gene

Genomics for MDS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MDS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J023580 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.1 -68 2 SP1 CTBP1 FOS NR2F2 POLR2A TFAP4 NRF1 GLIS1 CHD2 NFE2L2 MDS2 ENSG00000285802 lnc-RPL11-4 LOC107984928 ID3 MG828730-001 RPL11
GH01J023579 Promoter/Enhancer 0.5 Ensembl dbSUPER 600.7 -1.6 -1594 0.6 MDS2 ENSG00000285802 lnc-RPL11-4 LOC107984928 ID3 MG828730-001 RPL11
GH01J023583 Enhancer 0.4 Ensembl dbSUPER 600.7 +1.6 1606 0.2 EGR1 MDS2 ENSG00000285802 LOC107984928 ID3 MG828730-001 RPL11
GH01J023553 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 -22.4 -22387 12.4 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A ATF7 TEAD4 PRDM10 REST ZNF629 ID3 lnc-E2F2-1 lnc-RPL11-5 piR-51937 LINC01355 SRSF10 E2F2 RPL11 MDS2 PNRC2
GH01J023634 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.9 +53.8 53806 1.8 GATAD2A CTCF ZNF629 ZNF692 ZNF143 ZIC2 PATZ1 REST RAD21 IKZF2 MDS2 ID3 piR-50437-019 lnc-ID3-4 lnc-ID3-5 RPL11 MG828730-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MDS2 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for MDS2

Top Transcription factor binding sites by QIAGEN in the MDS2 gene promoter:
  • AREB6
  • c-Ets-1
  • Egr-1
  • FOXD3
  • FOXO1
  • FOXO1a
  • HSF1 (long)
  • HSF1short
  • RREB-1

Genomic Locations for MDS2 Gene

Genomic Locations for MDS2 Gene
chr1:23,581,495-23,640,568
(GRCh38/hg38)
Size:
59,074 bases
Orientation:
Plus strand
chr1:23,907,985-23,967,058
(GRCh37/hg19)
Size:
59,074 bases
Orientation:
Plus strand

Genomic View for MDS2 Gene

Genes around MDS2 on UCSC Golden Path with GeneCards custom track
MDS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MDS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MDS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MDS2 Gene

Proteins for MDS2 Gene

  • Protein details for MDS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NDY4-MDS2_HUMAN
    Recommended name:
    Myelodysplastic syndrome 2 translocation-associated protein
    Protein Accession:
    Q8NDY4

    Protein attributes for MDS2 Gene

    Size:
    140 amino acids
    Molecular mass:
    15384 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MDS2 Gene

Post-translational modifications for MDS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MDS2 Gene

Domains & Families for MDS2 Gene

Protein Domains for MDS2 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for MDS2 Gene

GenScript: Design optimal peptide antigens:
  • Myelodysplastic syndrome 2 translocation-associated protein (MDS2_HUMAN)
genes like me logo Genes that share domains with MDS2: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MDS2 Gene

Function for MDS2 Gene

Phenotypes From GWAS Catalog for MDS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MDS2 Gene

Localization for MDS2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MDS2 gene
Compartment Confidence
extracellular 4
nucleus 2
plasma membrane 1
mitochondrion 1
cytosol 1

Gene Ontology (GO) - Cellular Components for MDS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space HDA 23580065
genes like me logo Genes that share ontologies with MDS2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for MDS2 Gene

Pathways & Interactions for MDS2 Gene

PathCards logo

SuperPathways for MDS2 Gene

No Data Available

Interacting Proteins for MDS2 Gene

Selected Interacting proteins: Q8NDY4-MDS2_HUMAN for MDS2 Gene via IID

Symbol External ID(s) Details
ETV6

Gene Ontology (GO) - Biological Process for MDS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MDS2 Gene

Drugs & Compounds for MDS2 Gene

No Compound Related Data Available

Transcripts for MDS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MDS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B6D0D_9606 lncRNA 1781 2

Ensembl: ENST00000477916 (view in UCSC) ,

LNCipedia: lnc-RPL11-1:5,

URS0000D64BA3_9606 lncRNA 1029 2

Ensembl: ENST00000374555 (view in UCSC) ,

LNCipedia: lnc-RPL11-1:8,

URS0000D61E0B_9606 lncRNA 420 2

Ensembl: ENST00000612756 (view in UCSC) ,

LNCipedia: lnc-RPL11-1:10,

URS00008BB8E7_9606 lncRNA 398 3

LncBook: HSALNT0003168,

LNCipedia: lnc-RPL11-1:9,

NONCODE: NONHSAT001537.2,

URS000075ABAE_9606 lncRNA 1027 1

LNCipedia: lnc-RPL11-1:7,

MDS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MDS2 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MDS2 Gene

No ASD Table

Relevant External Links for MDS2 Gene

GeneLoc Exon Structure for
MDS2

Expression for MDS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MDS2 Gene

mRNA differential expression in normal tissues according to GTEx for MDS2 Gene

This gene is overexpressed in Whole Blood (x8.1), Thyroid (x6.5), Spleen (x5.5), and Small Intestine - Terminal Ileum (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MDS2

SOURCE GeneReport for Unigene cluster for MDS2 Gene:

Hs.523369

mRNA Expression by UniProt/SwissProt for MDS2 Gene:

Q8NDY4-MDS2_HUMAN
Tissue specificity: Highly expressed in peripheral blood leukocytes, spleen, thymus, kidney, pancreas and lung.

Evidence on tissue expression from TISSUES for MDS2 Gene

  • Skin(2.2)
genes like me logo Genes that share expression patterns with MDS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for MDS2 Gene

Orthologs for MDS2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MDS2 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia MDS2 31
  • 96 (a)
OneToOne
Species where no ortholog for MDS2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for MDS2 Gene

ENSEMBL:
Gene Tree for MDS2 (if available)
TreeFam:
Gene Tree for MDS2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for MDS2: view image

Paralogs for MDS2 Gene

No data available for Paralogs for MDS2 Gene

Variants for MDS2 Gene

Additional dbSNP identifiers (rs#s) for MDS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for MDS2 Gene

Variant ID Type Subtype PubMed ID
dgv25e212 CNV loss 25503493
esv275297 CNV loss 21479260
nsv460840 CNV loss 19166990
nsv545774 CNV loss 21841781
nsv834435 CNV loss 17160897

Variation tolerance for MDS2 Gene

Gene Damage Index Score: 10.50; 91.08% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for MDS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MDS2

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MDS2 Gene

Disorders for MDS2 Gene

MalaCards: The human disease database

(4) MalaCards diseases for MDS2 Gene - From: DISEASES and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search MDS2 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

MDS2_HUMAN
  • Note=A chromosomal aberration involving MDS2 is a cause of myelodysplastic syndrome (MDS). Translocation t(1;12)(p36.1;p13) with ETV6. {ECO:0000269 PubMed:12203785}.

Additional Disease Information for MDS2

genes like me logo Genes that share disorders with MDS2: view

No data available for Genatlas for MDS2 Gene

Publications for MDS2 Gene

  1. A novel gene, MDS2, is fused to ETV6/TEL in a t(1;12)(p36.1;p13) in a patient with myelodysplastic syndrome. (PMID: 12203785) Odero MD … Novo FJ (Genes, chromosomes & cancer 2002) 2 3 4 23
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4
  3. Shotgun proteomics reveals specific modulated protein patterns in tears of patients with primary open angle glaucoma naïve to therapy. (PMID: 23580065) Pieragostino D … Del Boccio P (Molecular bioSystems 2013) 3
  4. Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels. (PMID: 20700443) Meyer TE … Meta Analysis of Glucose and Insulin Related Traits Consortium (PLoS genetics 2010) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for MDS2 Gene

Sources for MDS2 Gene