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Aliases for MCF2L-AS1 Gene

Subcategory (RNA class) for MCF2L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MCF2L-AS1 Gene

  • MCF2L Antisense RNA 1 2 3 5
  • MCF2L Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MCF2L-AS1 Gene

Previous GeneCards Identifiers for MCF2L-AS1 Gene

  • GC13M113623

Summaries for MCF2L-AS1 Gene

GeneCards Summary for MCF2L-AS1 Gene

MCF2L-AS1 (MCF2L Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MCF2L-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCF2L-AS1 Gene

Genomics for MCF2L-AS1 Gene

GeneHancer (GH) Regulatory Elements for MCF2L-AS1 Gene

Promoters and enhancers for MCF2L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I112968 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 558 -0.3 -280 2 NFIB ARID4B KLF17 SIN3A ZNF76 ZNF2 RAD21 RARA YY1 ZNF335 MCF2L-AS1 MCF2L ENSG00000267868 ENSG00000269356
GH13I112970 Enhancer 0.9 FANTOM5 dbSUPER 550.8 -1.9 -1884 0.3 FEZF1 ZNF2 ZFHX2 GLIS2 ZBTB48 PATZ1 ZNF600 ZBTB20 EGR2 MAZ MCF2L-AS1 MCF2L PROZ ENSG00000269356
GH13I113021 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.4 -54.1 -54135 2.5 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 FOS RXRA MCF2L MCF2L-AS1 F7 PROZ F10 F10-AS1 KARSP2 ENSG00000269376 PIR52168
GH13I113008 Enhancer 1.1 ENCODE dbSUPER 11.7 -41.0 -41046 2.4 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 ATF7 RXRA ENSG00000269376 ENSG00000269356 MCF2L-AS1 MCF2L PIR52168
GH13I113083 Enhancer 0.9 ENCODE dbSUPER 10.7 -115.0 -114975 1.5 MXI1 PKNOX1 ZBTB21 MAX RFX5 SCRT2 SMC3 ZNF600 KLF8 CREM MCF2L F7 PROZ MCF2L-AS1 GC13M113087 GC13M113086 PIR52168 GC13M113076
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MCF2L-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MCF2L-AS1 Gene

Genomic Locations for MCF2L-AS1 Gene
chr13:112,967,484-112,968,824
(GRCh38/hg38)
Size:
1,341 bases
Orientation:
Minus strand
chr13:113,621,798-113,623,138
(GRCh37/hg19)

Genomic View for MCF2L-AS1 Gene

Genes around MCF2L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MCF2L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MCF2L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCF2L-AS1 Gene

Proteins for MCF2L-AS1 Gene

Post-translational modifications for MCF2L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MCF2L-AS1 Gene

Domains & Families for MCF2L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MCF2L-AS1 Gene

Function for MCF2L-AS1 Gene

Phenotypes From GWAS Catalog for MCF2L-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MCF2L-AS1 Gene

Localization for MCF2L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MCF2L-AS1 Gene

Pathways & Interactions for MCF2L-AS1 Gene

SuperPathways for MCF2L-AS1 Gene

No Data Available

Interacting Proteins for MCF2L-AS1 Gene

Gene Ontology (GO) - Biological Process for MCF2L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MCF2L-AS1 Gene

Drugs & Compounds for MCF2L-AS1 Gene

No Compound Related Data Available

Transcripts for MCF2L-AS1 Gene

mRNA/cDNA for MCF2L-AS1 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MCF2L-AS1 Gene

MCF2L antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MCF2L-AS1 Gene

No ASD Table

Relevant External Links for MCF2L-AS1 Gene

GeneLoc Exon Structure for
MCF2L-AS1
ECgene alternative splicing isoforms for
MCF2L-AS1

Expression for MCF2L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MCF2L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MCF2L-AS1 Gene

This gene is overexpressed in Pituitary (x5.2).

SOURCE GeneReport for Unigene cluster for MCF2L-AS1 Gene:

Hs.667436
genes like me logo Genes that share expression patterns with MCF2L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MCF2L-AS1 Gene

Orthologs for MCF2L-AS1 Gene

Evolution for MCF2L-AS1 Gene

ENSEMBL:
Gene Tree for MCF2L-AS1 (if available)
TreeFam:
Gene Tree for MCF2L-AS1 (if available)

No data available for Orthologs for MCF2L-AS1 Gene

Paralogs for MCF2L-AS1 Gene

No data available for Paralogs for MCF2L-AS1 Gene

Variants for MCF2L-AS1 Gene

Sequence variations from dbSNP and Humsavar for MCF2L-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1002216968 -- 112,970,314(-) G/A/T upstream_transcript_variant
rs1002496773 -- 112,969,092(-) C/T upstream_transcript_variant
rs1003375169 -- 112,967,275(-) A/T downstream_transcript_variant
rs1004144317 -- 112,970,438(-) A/C upstream_transcript_variant
rs1005298589 -- 112,969,360(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MCF2L-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759969 CNV loss 17122850
nsv1044644 CNV gain 25217958
nsv1047144 CNV gain 25217958
nsv1125190 CNV insertion 24896259
nsv428291 CNV loss 18775914
nsv509519 CNV insertion 20534489
nsv832723 CNV loss 17160897
nsv951924 CNV deletion 24416366

Additional Variant Information for MCF2L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MCF2L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MCF2L-AS1 Gene

Disorders for MCF2L-AS1 Gene

Additional Disease Information for MCF2L-AS1

No disorders were found for MCF2L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MCF2L-AS1 Gene

Publications for MCF2L-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for MCF2L-AS1 Gene

Sources for MCF2L-AS1 Gene

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