Aliases for MBNL1-AS1 Gene

Subcategory (RNA class) for MBNL1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MBNL1-AS1 Gene

  • MBNL1 Antisense RNA 1 2 3 5
  • MBNL1-AS1 2 168
  • HSALNG0029874 167
  • NONHSAG036412 92

External Ids for MBNL1-AS1 Gene

Previous GeneCards Identifiers for MBNL1-AS1 Gene

  • GC03M151982

Summaries for MBNL1-AS1 Gene

GeneCards Summary for MBNL1-AS1 Gene

MBNL1-AS1 (MBNL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MBNL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MBNL1-AS1 Gene

Genomics for MBNL1-AS1 Gene

GeneHancer (GH) Regulatory Elements for MBNL1-AS1 Gene

Promoters and enhancers for MBNL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J152265 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 507 -2.0 -1984 12.3 ZBTB40 SIN3A NRF1 TCF12 POLR2G GTF2E2 JUND FOS ZFX ZIC2 MBNL1-AS1 MBNL1 ENSG00000243305 ENSG00000201217 TMEM14EP lnc-MBNL1-3 NONHSAG036411.2
GH03J152297 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 16.6 -31.2 -31165 5.9 FOXK2 ZBTB40 SIN3A NRF1 POLR2G SP1 NCOR1 BCLAF1 JUND FOS MBNL1 NONHSAG036411.2 TMEM14EP MBNL1-AS1 LOC105374162 lnc-MBNL1-3
GH03J152240 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 17.1 +25.4 25434 7.2 PHB2 AFF1 REST DNMT1 HES1 MYC EP300 CTBP1 FOXA2 HDAC3 MBNL1 lnc-MBNL1-3 MBNL1-AS1
GH03J152314 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 16.1 -50.0 -50038 9.9 EP300 FOS ZBTB11 DNMT1 MEF2C CUX1 MYC RCOR1 JUN ATF2 TMEM14EP MBNL1-AS1 MBNL1 LOC105374162 lnc-IGSF10-8
GH03J152195 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 12.9 +68.4 68416 10 USF1 GTF2E2 EP300 TAF7 AFF1 JUND RELA HES1 POLR2A ZNF830 MBNL1 MBNL1-AS1 AADACL2 LOC101928166 piR-37663-038 KR024014
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MBNL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MBNL1-AS1 Gene

Genomic Locations for MBNL1-AS1 Gene
chr3:152,219,241-152,269,626
(GRCh38/hg38)
Size:
50,386 bases
Orientation:
Minus strand
chr3:151,980,405-151,987,415
(GRCh37/hg19)
Size:
7,011 bases
Orientation:
Minus strand

Genomic View for MBNL1-AS1 Gene

Genes around MBNL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MBNL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MBNL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MBNL1-AS1 Gene

Proteins for MBNL1-AS1 Gene

Post-translational modifications for MBNL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MBNL1-AS1 Gene

Domains & Families for MBNL1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MBNL1-AS1 Gene

Function for MBNL1-AS1 Gene

Phenotypes From GWAS Catalog for MBNL1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MBNL1-AS1 Gene

Localization for MBNL1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MBNL1-AS1 gene
Compartment Confidence
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MBNL1-AS1 Gene

Pathways & Interactions for MBNL1-AS1 Gene

PathCards logo

SuperPathways for MBNL1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MBNL1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MBNL1-AS1 Gene

Drugs & Compounds for MBNL1-AS1 Gene

No Compound Related Data Available

Transcripts for MBNL1-AS1 Gene

mRNA/cDNA for MBNL1-AS1 Gene

16 RNACentral transcripts :
2 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
4 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MBNL1-AS1 Gene

No ASD Table

Relevant External Links for MBNL1-AS1 Gene

GeneLoc Exon Structure for
MBNL1-AS1

Expression for MBNL1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MBNL1-AS1

SOURCE GeneReport for Unigene cluster for MBNL1-AS1 Gene:

Hs.725347
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MBNL1-AS1 Gene

Orthologs for MBNL1-AS1 Gene

Evolution for MBNL1-AS1 Gene

ENSEMBL:
Gene Tree for MBNL1-AS1 (if available)
TreeFam:
Gene Tree for MBNL1-AS1 (if available)

No data available for Orthologs for MBNL1-AS1 Gene

Paralogs for MBNL1-AS1 Gene

No data available for Paralogs for MBNL1-AS1 Gene

Variants for MBNL1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MBNL1-AS1 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
rs17433672 Benign: not specified 152,268,473(-) C/T NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for MBNL1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MBNL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv954493 CNV duplication 24416366

Additional Variant Information for MBNL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MBNL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MBNL1-AS1 Gene

Disorders for MBNL1-AS1 Gene

Additional Disease Information for MBNL1-AS1

No disorders were found for MBNL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MBNL1-AS1 Gene

Publications for MBNL1-AS1 Gene

  1. Long non-coding RNA MBNL1-AS1 regulates proliferation, migration, and invasion of cancer stem cells in colon cancer by interacting with MYL9 via sponging microRNA-412-3p. (PMID: 31255531) Zhu K … Yu W (Clinics and research in hepatology and gastroenterology 2020) 2 3 54
  2. Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis. (PMID: 28900495) Tian X … Fang JY (Journal of Cancer 2017) 3 54
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 54

Products for MBNL1-AS1 Gene

Sources for MBNL1-AS1 Gene