Aliases for MBNL1-AS1 Gene

Data sources for MBNL1-AS1 Gene:

Subcategory (RNA class) for MBNL1-AS1 Gene

lncRNA

Aliases for MBNL1-AS1 Gene

External Ids for MBNL1-AS1 Gene

Previous GeneCards Identifiers for MBNL1-AS1 Gene

  • GC03M151982
  • GC03M152262

Summaries for MBNL1-AS1 Gene

GeneCards Summary for MBNL1-AS1 Gene

MBNL1-AS1 (MBNL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MBNL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MBNL1-AS1 Gene

Genomics for MBNL1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MBNL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J152265 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 257 -2.0 -1984 12.3 CHD2 TBP FEZF1 DEK IKZF1 SMAD5 IRF2 POLR2A BHLHE40 ELF1 MBNL1-AS1 MBNL1 TMEM14EP HSALNG0029876 NONHSAG036411.2 lnc-MBNL1-3 P2RY1
GH03J153158 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 14 -893.8 -893815 9 TBP ZBTB10 MXD4 BCL11A SP1 FEZF1 CEBPA MNT IKZF1 SMAD5 RAP2B ENSG00000244268 MBNL1-AS1 MBNL1 ENSG00000243305 P2RY1 HSALNG0029913 ARHGEF26
GH03J152297 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 16.6 -31.2 -31165 5.9 SP1 BCL11A FEZF1 CEBPA NR2C1 MNT SMAD5 POLR2A BHLHE40 NONO MBNL1 NONHSAG036411.2 TMEM14EP MBNL1-AS1 HSALNG0029878 lnc-MBNL1-3 P2RY1
GH03J152240 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 17.1 +25.4 25434 7.2 TBP FEZF1 CEBPA MNT IKZF1 IRF2 HES1 BHLHE40 CEBPB ARNT MBNL1 lnc-MBNL1-3 MBNL1-AS1 HSALNG0029876 P2RY1
GH03J152314 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 16.1 -50.0 -50038 9.9 BCL11A CEBPA MNT IKZF1 MBD2 POLR2A BHLHE40 NONO ARNT ZNF395 TMEM14EP MBNL1-AS1 MBNL1 HSALNG0029878 lnc-IGSF10-8 P2RY1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MBNL1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MBNL1-AS1 Gene

Latest Assembly
chr3:152,215,092-152,269,626
(GRCh38/hg38)
Size:
54,535 bases
Orientation:
Minus strand

Previous Assembly
chr3:151,980,405-151,987,415
(GRCh37/hg19 by Entrez Gene)
Size:
7,011 bases
Orientation:
Minus strand

chr3:151,980,405-151,987,344
(GRCh37/hg19 by Ensembl)
Size:
6,940 bases
Orientation:
Minus strand

Genomic View for MBNL1-AS1 Gene

Genes around MBNL1-AS1 on UCSC Golden Path with GeneCards custom track
MBNL1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MBNL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MBNL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MBNL1-AS1 Gene

Proteins for MBNL1-AS1 Gene

Post-translational modifications for MBNL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MBNL1-AS1 Gene

Domains & Families for MBNL1-AS1 Gene

Gene Families for MBNL1-AS1 Gene

genes like me logo Genes that share domains with MBNL1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MBNL1-AS1 Gene

Function for MBNL1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MBNL1-AS1 Gene

Localization for MBNL1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MBNL1-AS1 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MBNL1-AS1 Gene

Pathways & Interactions for MBNL1-AS1 Gene

PathCards logo

SuperPathways for MBNL1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MBNL1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MBNL1-AS1 Gene

Drugs & Compounds for MBNL1-AS1 Gene

No Compound Related Data Available

Transcripts for MBNL1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MBNL1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000DB494_9606 lncRNA 6587 2

Ensembl: ENST00000608395 (view in UCSC) ,

LNCipedia: MBNL1-AS1:3,

URS00002B2516_9606 lncRNA 997 2

Ensembl: ENST00000445466 (view in UCSC) ,

LNCipedia: MBNL1-AS1:4, MBNL1-AS1:7,

URS0000759FEE_9606 lncRNA 6656 1

RefSeq: NR_027038,

URS000075BBFA_9606 lncRNA 6645 1

RefSeq: NR_027037,

URS0000EF4D71_9606 lncRNA 3244 1

Ensembl: ENST00000665663 (view in UCSC) ,

MBNL1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MBNL1-AS1 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MBNL1-AS1 Gene

No ASD Table

Relevant External Links for MBNL1-AS1 Gene

GeneLoc Exon Structure for
MBNL1-AS1

Expression for MBNL1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MBNL1-AS1

SOURCE GeneReport for Unigene cluster for MBNL1-AS1 Gene:

Hs.725347
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MBNL1-AS1 Gene

Orthologs for MBNL1-AS1 Gene

Evolution for MBNL1-AS1 Gene

ENSEMBL:
Gene Tree for MBNL1-AS1 (if available)
TreeFam:
Gene Tree for MBNL1-AS1 (if available)

No data available for Orthologs for MBNL1-AS1 Gene

Paralogs for MBNL1-AS1 Gene

No data available for Paralogs for MBNL1-AS1 Gene

Variants for MBNL1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MBNL1-AS1 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
rs17433672 Benign: not specified 152,268,473(-) C/T
NM_001376819.1(MBNL1):c.-790+24033C>T
NON_CODING_TRANSCRIPT_VARIANT,INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MBNL1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MBNL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv954493 CNV duplication 24416366

Additional Variant Information for MBNL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MBNL1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MBNL1-AS1 Gene

Disorders for MBNL1-AS1 Gene

Additional Disease Information for MBNL1-AS1

No disorders were found for MBNL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MBNL1-AS1 Gene

Publications for MBNL1-AS1 Gene

  1. Long non-coding RNA MBNL1-AS1 regulates proliferation, migration, and invasion of cancer stem cells in colon cancer by interacting with MYL9 via sponging microRNA-412-3p. (PMID: 31255531) Zhu K … Yu W (Clinics and research in hepatology and gastroenterology 2020) 2 3
  2. LncRNA MBNL1-AS1 represses cell proliferation and enhances cell apoptosis via targeting miR-135a-5p/PHLPP2/FOXO1 axis in bladder cancer. (PMID: 31769229) Wei X … Song D (Cancer medicine 2020) 3
  3. microRNA-301b-3p downregulation underlies a novel inhibitory role of long non-coding RNA MBNL1-AS1 in non-small cell lung cancer. (PMID: 31113460) Li P … Ma H (Stem cell research & therapy 2019) 3
  4. Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis. (PMID: 28900495) Tian X … Fang JY (Journal of Cancer 2017) 3
  5. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3

Products for MBNL1-AS1 Gene

Sources for MBNL1-AS1 Gene