Aliases for MARCHF10-DT Gene

Data sources for MARCHF10-DT Gene:

RNA type for MARCHF10-DT Gene

lncRNA

Aliases for MARCHF10-DT Gene

External Ids for MARCHF10-DT Gene

Previous HGNC Symbols for MARCHF10-DT Gene

  • MARCH10-DT

Summaries for MARCHF10-DT Gene

GeneCards Summary for MARCHF10-DT Gene

MARCHF10-DT (MARCHF10 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MARCHF10-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MARCHF10-DT Gene

Genomics for MARCHF10-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MARCHF10-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J062808 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 250.7 -0.3 -298 1.2 ZNF217 SIN3A MBD2 ELF1 KLF9 CTBP1 SP2 CUX1 DDX20 SP1 MARCHF10 MARCHF10-DT lnc-CYB561-116 MAP3K3 HSALNG0117979 MRC2
GH17J062809 Enhancer 0.4 ENCODE 250.7 +1.4 1356 0.2 NBN GATAD2B PRDM1 MARCHF10 MARCHF10-DT lnc-CYB561-116 HSALNG0117981 TANC2
GH17J062818 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +13.7 13736 7.4 ZNF600 JUND CEBPA POLR2A ZNF217 CEBPB SIX4 MAX ZBTB7B EP300 TANC2 HSALNG0117981 MARCHF10 MARCHF10-DT
GH17J062826 Enhancer 0.8 ENCODE 0.4 +19.1 19095 2.4 LARP7 BRCA1 ZNF217 CEBPB MAX EP300 ELF1 PRDM1 ZNF610 RAD21 DDX42 INTS2 MAP3K3 HSALNG0117981 PRELID3BP3 MARCHF10 MARCHF10-DT TANC2
GH17J062830 Enhancer 0.3 Ensembl 0.4 +22.7 22702 1.2 SPI1 SREBF1 TLK2 HSALNG0117981 PRELID3BP3 MARCHF10 MARCHF10-DT TANC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MARCHF10-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MARCHF10-DT Gene

Latest Assembly
chr17:62,808,499-62,847,757
(GRCh38/hg38)
Size:
39,259 bases
Orientation:
Plus strand

Previous Assembly
chr17:60,885,863-60,913,732
(GRCh37/hg19 by Entrez Gene)
Size:
27,870 bases
Orientation:
Plus strand

chr17:60,885,861-60,913,732
(GRCh37/hg19 by Ensembl)
Size:
27,872 bases
Orientation:
Plus strand

Genomic View for MARCHF10-DT Gene

Genes around MARCHF10-DT on UCSC Golden Path with GeneCards custom track
MARCHF10-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MARCHF10-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MARCHF10-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MARCHF10-DT Gene

Proteins for MARCHF10-DT Gene

Post-translational modifications for MARCHF10-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for MARCHF10-DT Gene

Domains & Families for MARCHF10-DT Gene

Gene Families for MARCHF10-DT Gene

genes like me logo Genes that share domains with MARCHF10-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MARCHF10-DT Gene

Function for MARCHF10-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MARCHF10-DT Gene

Localization for MARCHF10-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MARCHF10-DT Gene

Pathways & Interactions for MARCHF10-DT Gene

PathCards logo

SuperPathways for MARCHF10-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for MARCHF10-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MARCHF10-DT Gene

Drugs & Compounds for MARCHF10-DT Gene

No Compound Related Data Available

Transcripts for MARCHF10-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MARCHF10-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002DCEC5_9606 lncRNA 1811 4

Ensembl: ENST00000584542 (view in UCSC) ,

LncBook: HSALNT0243632,

LNCipedia: lnc-MRC2-3:1,

NONCODE: NONHSAT055178.2,

URS0000A76FE5_9606 lncRNA 1809 2

RefSeq: NR_135634,

LNCipedia: lnc-MRC2-3:6,

URS00008C1A8E_9606 lncRNA 546 3

LncBook: HSALNT0243635,

LNCipedia: lnc-MRC2-3:5,

NONCODE: NONHSAT055179.2,

URS00009B4C2F_9606 lncRNA 1809 2

LncBook: HSALNT0243633,

NONCODE: NONHSAT175461.1,

URS0000D5D462_9606 lncRNA 39253 1

LNCipedia: lnc-MRC2-3:4,

MARCHF10-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MARCHF10-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MARCHF10-DT Gene

No ASD Table

Relevant External Links for MARCHF10-DT Gene

GeneLoc Exon Structure for
MARCHF10-DT

Expression for MARCHF10-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MARCHF10-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MARCHF10-DT Gene

Orthologs for MARCHF10-DT Gene

Evolution for MARCHF10-DT Gene

ENSEMBL:
Gene Tree for MARCHF10-DT (if available)
TreeFam:
Gene Tree for MARCHF10-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for MARCHF10-DT

No data available for Orthologs for MARCHF10-DT Gene

Paralogs for MARCHF10-DT Gene

No data available for Paralogs for MARCHF10-DT Gene

Variants for MARCHF10-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MARCHF10-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for MARCHF10-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MARCHF10-DT
Leiden Open Variation Database (LOVD)
MARCHF10-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MARCHF10-DT Gene

Disorders for MARCHF10-DT Gene

No disorders were found for MARCHF10-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MARCHF10-DT Gene

Publications for MARCHF10-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for MARCHF10-DT Gene

Products for MARCHF10-DT Gene

Sources for MARCHF10-DT Gene