Aliases for MAPT-IT1 Gene

Data sources for MAPT-IT1 Gene:

RNA type for MAPT-IT1 Gene


Aliases for MAPT-IT1 Gene

External Ids for MAPT-IT1 Gene

Previous GeneCards Identifiers for MAPT-IT1 Gene

  • GC17P043974
  • GC17P043976

Summaries for MAPT-IT1 Gene

GeneCards Summary for MAPT-IT1 Gene

MAPT-IT1 (MAPT Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MAPT-IT1 include Koolen-De Vries Syndrome and Peroxisome Biogenesis Disorder 1B.

Additional gene information for MAPT-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAPT-IT1 Gene

Genomics for MAPT-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MAPT-IT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAPT-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MAPT-IT1 Gene

Latest Assembly
3,017 bases
Plus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
3,016 bases
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr17(ALT_REF_LOCI_1):889,441-892,431 (-)
  • chr17(ALT_REF_LOCI_2):597,911-600,926 (+)

Genomic View for MAPT-IT1 Gene

Genes around MAPT-IT1 on UCSC Golden Path with GeneCards custom track
MAPT-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MAPT-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPT-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPT-IT1 Gene

Proteins for MAPT-IT1 Gene

Post-translational modifications for MAPT-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAPT-IT1 Gene

Domains & Families for MAPT-IT1 Gene

Gene Families for MAPT-IT1 Gene

genes like me logo Genes that share domains with MAPT-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAPT-IT1 Gene

Function for MAPT-IT1 Gene

Phenotypes From GWAS Catalog for MAPT-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPT-IT1 Gene

Localization for MAPT-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAPT-IT1 Gene

Pathways & Interactions for MAPT-IT1 Gene

PathCards logo

SuperPathways for MAPT-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MAPT-IT1 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAPT-IT1 Gene

Drugs & Compounds for MAPT-IT1 Gene

No Compound Related Data Available

Transcripts for MAPT-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MAPT-IT1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000811F6C_9606 lncRNA 3016 3

Ensembl: ENST00000624111 (view in UCSC) ,

LNCipedia: MAPT-IT1:1,


URS000075C819_9606 lncRNA 3016 1

RefSeq: NR_024560,

MAPT-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MAPT-IT1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MAPT-IT1 Gene

No ASD Table

Relevant External Links for MAPT-IT1 Gene

GeneLoc Exon Structure for

Expression for MAPT-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAPT-IT1 Gene

mRNA expression in normal human tissues for MAPT-IT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAPT-IT1

SOURCE GeneReport for Unigene cluster for MAPT-IT1 Gene:

genes like me logo Genes that share expression patterns with MAPT-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAPT-IT1 Gene

Orthologs for MAPT-IT1 Gene

Evolution for MAPT-IT1 Gene

Gene Tree for MAPT-IT1 (if available)
Gene Tree for MAPT-IT1 (if available)
Alliance of Genome Resources:
Additional Orthologs for MAPT-IT1

No data available for Orthologs for MAPT-IT1 Gene

Paralogs for MAPT-IT1 Gene

No data available for Paralogs for MAPT-IT1 Gene

Variants for MAPT-IT1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MAPT-IT1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MAPT-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv3178n100 CNV gain 25217958
esv2762433 CNV gain+loss 21179565
nsv1146669 OTHER inversion 26484159

Additional Variant Information for MAPT-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
Leiden Open Variation Database (LOVD)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MAPT-IT1 Gene

Disorders for MAPT-IT1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for MAPT-IT1 Gene - From: COP

Disorder Aliases PubMed IDs
koolen-de vries syndrome
  • kdvs
peroxisome biogenesis disorder 1b
  • pbd1b
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MAPT-IT1

genes like me logo Genes that share disorders with MAPT-IT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MAPT-IT1 Gene

Publications for MAPT-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for MAPT-IT1 Gene

Sources for MAPT-IT1 Gene