Aliases for MAPT-IT1 Gene

Data sources for MAPT-IT1 Gene:

RNA type for MAPT-IT1 Gene

lncRNA

Aliases for MAPT-IT1 Gene

External Ids for MAPT-IT1 Gene

Previous GeneCards Identifiers for MAPT-IT1 Gene

  • GC17P043974
  • GC17P043976

Summaries for MAPT-IT1 Gene

GeneCards Summary for MAPT-IT1 Gene

MAPT-IT1 (MAPT Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MAPT-IT1 include Koolen-De Vries Syndrome and Peroxisome Biogenesis Disorder 1B.

Additional gene information for MAPT-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAPT-IT1 Gene

Genomics for MAPT-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MAPT-IT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAPT-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MAPT-IT1 Gene

Latest Assembly
chr17:45,895,782-45,898,798
(GRCh38/hg38)
Size:
3,017 bases
Orientation:
Plus strand

Previous Assembly
chr17:43,973,149-43,976,164
(GRCh37/hg19 by Entrez Gene)
Size:
3,016 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr17(ALT_REF_LOCI_1):889,441-892,431 (-)
  • chr17(ALT_REF_LOCI_2):597,911-600,926 (+)

Genomic View for MAPT-IT1 Gene

Genes around MAPT-IT1 on UCSC Golden Path with GeneCards custom track
MAPT-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MAPT-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPT-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPT-IT1 Gene

Proteins for MAPT-IT1 Gene

Post-translational modifications for MAPT-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAPT-IT1 Gene

Domains & Families for MAPT-IT1 Gene

Gene Families for MAPT-IT1 Gene

genes like me logo Genes that share domains with MAPT-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAPT-IT1 Gene

Function for MAPT-IT1 Gene

Phenotypes From GWAS Catalog for MAPT-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPT-IT1 Gene

Localization for MAPT-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAPT-IT1 Gene

Pathways & Interactions for MAPT-IT1 Gene

PathCards logo

SuperPathways for MAPT-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MAPT-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAPT-IT1 Gene

Drugs & Compounds for MAPT-IT1 Gene

No Compound Related Data Available

Transcripts for MAPT-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MAPT-IT1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000811F6C_9606 lncRNA 3016 3

Ensembl: ENST00000624111 (view in UCSC) ,

LNCipedia: MAPT-IT1:1,

NONCODE: NONHSAT054183.2,

URS000075C819_9606 lncRNA 3016 1

RefSeq: NR_024560,

MAPT-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MAPT-IT1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MAPT-IT1 Gene

No ASD Table

Relevant External Links for MAPT-IT1 Gene

GeneLoc Exon Structure for
MAPT-IT1

Expression for MAPT-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAPT-IT1 Gene

mRNA expression in normal human tissues for MAPT-IT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAPT-IT1

SOURCE GeneReport for Unigene cluster for MAPT-IT1 Gene:

Hs.669307
genes like me logo Genes that share expression patterns with MAPT-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAPT-IT1 Gene

Orthologs for MAPT-IT1 Gene

Evolution for MAPT-IT1 Gene

ENSEMBL:
Gene Tree for MAPT-IT1 (if available)
TreeFam:
Gene Tree for MAPT-IT1 (if available)
Alliance of Genome Resources:
Additional Orthologs for MAPT-IT1

No data available for Orthologs for MAPT-IT1 Gene

Paralogs for MAPT-IT1 Gene

No data available for Paralogs for MAPT-IT1 Gene

Variants for MAPT-IT1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MAPT-IT1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MAPT-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv3178n100 CNV gain 25217958
esv2762433 CNV gain+loss 21179565
nsv1146669 OTHER inversion 26484159

Additional Variant Information for MAPT-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAPT-IT1
Leiden Open Variation Database (LOVD)
MAPT-IT1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MAPT-IT1 Gene

Disorders for MAPT-IT1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for MAPT-IT1 Gene - From: COP

Disorder Aliases PubMed IDs
koolen-de vries syndrome
  • kdvs
peroxisome biogenesis disorder 1b
  • pbd1b
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MAPT-IT1

genes like me logo Genes that share disorders with MAPT-IT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MAPT-IT1 Gene

Publications for MAPT-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for MAPT-IT1 Gene

Sources for MAPT-IT1 Gene