Aliases for MAPKAPK5-AS1 Gene

Subcategory (RNA class) for MAPKAPK5-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for MAPKAPK5-AS1 Gene

  • MAPKAPK5 Antisense RNA 1 2 3 4 5
  • MAPKAPK5-AS1 2 5 165
  • MAPKAPK5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C12orf47 3 4
  • Putative Uncharacterized Protein Encoded By MAPKAPK5-AS1 4
  • Chromosome 12 Open Reading Frame 47 2
  • MAPKAPK5 Antisense Gene Protein 1 4
  • Apoptosis-Related Protein PNAS-1 3
  • NONHSAG012313.2 91
  • HSALNG0094063 164
  • FLJ39616 2

External Ids for MAPKAPK5-AS1 Gene

Previous HGNC Symbols for MAPKAPK5-AS1 Gene

  • C12orf47

Previous GeneCards Identifiers for MAPKAPK5-AS1 Gene

  • GC12M112279

Summaries for MAPKAPK5-AS1 Gene

GeneCards Summary for MAPKAPK5-AS1 Gene

MAPKAPK5-AS1 (MAPKAPK5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MAPKAPK5-AS1 include Hepatocellular Carcinoma.

Additional gene information for MAPKAPK5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAPKAPK5-AS1 Gene

Genomics for MAPKAPK5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MAPKAPK5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J111840 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.8 804 4 ZNF221 BRCA1 SP1 CREB1 GATAD2A ZBTB33 ATF7 PRDM10 REST ZNF629 MAPKAPK5 MAPKAPK5-AS1 ATXN2 HECTD4 RPS2P41 ALDH2 TRAFD1 TMEM116 RPL6 ADAM1A
GH12J111866 Enhancer 0.9 Ensembl ENCODE dbSUPER 12.6 -26.0 -25963 4.1 PRDM1 EZH2 ZNF316 USF1 SIN3A CEBPB ZNF398 MEIS2 NANOG MAFK TMEM116 MAPKAPK5 MAPKAPK5-AS1 lnc-TMEM116-6 piR-37663-019
GH12J111753 Enhancer 1 ENCODE dbSUPER 11 +89.6 89603 0.2 CTCF IKZF1 JUND LARP7 ZNF143 REST RAD21 IRF2 ZBED1 ZNF444 ENSG00000257767 ALDH2 MAPKAPK5 MAPKAPK5-AS1 HSALNG0094056 ACAD10
GH12J111748 Enhancer 0.8 Ensembl ENCODE dbSUPER 11 +94.1 94126 1.4 SP1 NR2F2 RAD21 HNF4A RXRA HNF4G HSALNG0094056 ALDH2 MAPKAPK5 MAPKAPK5-AS1 ENSG00000257767 ACAD10
GH12J111904 Enhancer 0.3 ENCODE 12.1 -61.9 -61885 1 CTCF CBFA2T3 TMEM116 MAPKAPK5 MAPKAPK5-AS1 piR-38006 piR-37490
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAPKAPK5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MAPKAPK5-AS1 Gene

Genomic Locations for MAPKAPK5-AS1 Gene
chr12:111,839,703-111,843,005
(GRCh38/hg38)
Size:
3,303 bases
Orientation:
Minus strand
chr12:112,277,571-112,280,706
(GRCh37/hg19)
Size:
3,136 bases
Orientation:
Minus strand

Genomic View for MAPKAPK5-AS1 Gene

Genes around MAPKAPK5-AS1 on UCSC Golden Path with GeneCards custom track
MAPKAPK5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MAPKAPK5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPKAPK5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPKAPK5-AS1 Gene

Proteins for MAPKAPK5-AS1 Gene

  • Protein details for MAPKAPK5-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N8E1-MAAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by MAPKAPK5-AS1
    Protein Accession:
    Q8N8E1

    Protein attributes for MAPKAPK5-AS1 Gene

    Size:
    139 amino acids
    Molecular mass:
    13175 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MAPKAPK5-AS1 Gene

Post-translational modifications for MAPKAPK5-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MAPKAPK5-AS1 Gene

Domains & Families for MAPKAPK5-AS1 Gene

Gene Families for MAPKAPK5-AS1 Gene

Protein Domains for MAPKAPK5-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with MAPKAPK5-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAPKAPK5-AS1 Gene

Function for MAPKAPK5-AS1 Gene

Phenotypes From GWAS Catalog for MAPKAPK5-AS1 Gene

Phenotypes for MAPKAPK5-AS1 Gene

GenomeRNAi human phenotypes for MAPKAPK5-AS1:
genes like me logo Genes that share phenotypes with MAPKAPK5-AS1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPKAPK5-AS1 Gene

Localization for MAPKAPK5-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MAPKAPK5-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAPKAPK5-AS1 Gene

Pathways & Interactions for MAPKAPK5-AS1 Gene

PathCards logo

SuperPathways for MAPKAPK5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MAPKAPK5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAPKAPK5-AS1 Gene

Drugs & Compounds for MAPKAPK5-AS1 Gene

No Compound Related Data Available

Transcripts for MAPKAPK5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MAPKAPK5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000043B52F_9606 lncRNA 662 4

Ensembl: ENST00000609983 (view in UCSC) ,

LncBook: HSALNT0195004,

LNCipedia: MAPKAPK5-AS1:19,

NONCODE: NONHSAT164007.1,

URS000021136E_9606 lncRNA 605 4

Ensembl: ENST00000609228 (view in UCSC) ,

LncBook: HSALNT0195001,

LNCipedia: MAPKAPK5-AS1:20,

NONCODE: NONHSAT164006.1,

URS00002C9009_9606 lncRNA 543 4

Ensembl: ENST00000590479 (view in UCSC) ,

LncBook: HSALNT0194990,

LNCipedia: MAPKAPK5-AS1:18,

NONCODE: NONHSAT030763.2,

URS000057646B_9606 lncRNA 1957 3

Ensembl: ENST00000456429 (view in UCSC) ,

LNCipedia: MAPKAPK5-AS1:1,

NONCODE: NONHSAT030757.2,

URS0000CCDF80_9606 lncRNA 958 3

RefSeq: NR_152608,

LncBook: HSALNT0194977,

LNCipedia: MAPKAPK5-AS1:22,

MAPKAPK5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MAPKAPK5-AS1 Gene

11 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAPKAPK5-AS1 Gene

No ASD Table

Relevant External Links for MAPKAPK5-AS1 Gene

GeneLoc Exon Structure for
MAPKAPK5-AS1

Expression for MAPKAPK5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAPKAPK5-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAPKAPK5-AS1

SOURCE GeneReport for Unigene cluster for MAPKAPK5-AS1 Gene:

Hs.333120
genes like me logo Genes that share expression patterns with MAPKAPK5-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAPKAPK5-AS1 Gene

Orthologs for MAPKAPK5-AS1 Gene

Evolution for MAPKAPK5-AS1 Gene

ENSEMBL:
Gene Tree for MAPKAPK5-AS1 (if available)
TreeFam:
Gene Tree for MAPKAPK5-AS1 (if available)

No data available for Orthologs for MAPKAPK5-AS1 Gene

Paralogs for MAPKAPK5-AS1 Gene

No data available for Paralogs for MAPKAPK5-AS1 Gene

Variants for MAPKAPK5-AS1 Gene

Additional dbSNP identifiers (rs#s) for MAPKAPK5-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MAPKAPK5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1556n100 CNV gain 25217958
dgv2874n54 CNV gain 21841781
dgv304e214 CNV gain 21293372
dgv514e212 CNV gain 25503493
esv2760710 CNV gain 21179565
nsv455715 CNV gain 19166990
nsv470317 CNV gain 18288195
nsv515716 CNV gain 19592680

Additional Variant Information for MAPKAPK5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAPKAPK5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MAPKAPK5-AS1 Gene

Disorders for MAPKAPK5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MAPKAPK5-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with MAPKAPK5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MAPKAPK5-AS1 Gene

Publications for MAPKAPK5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  3. Long noncoding RNA MAPKAPK5-AS1 promotes colorectal cancer proliferation by partly silencing p21 expression. (PMID: 30343528) Ji H … Wang K (Cancer science 2019) 3
  4. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer SE … Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team (Nature 2006) 4

Products for MAPKAPK5-AS1 Gene

Sources for MAPKAPK5-AS1 Gene