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Aliases for MAPKAPK5-AS1 Gene

Subcategory (RNA class) for MAPKAPK5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAPKAPK5-AS1 Gene

  • MAPKAPK5 Antisense RNA 1 2 3 4 5
  • MAPKAPK5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C12orf47 3 4
  • Chromosome 12 Open Reading Frame 47 2
  • MAPKAPK5 Antisense Gene Protein 1 4
  • Apoptosis-Related Protein PNAS-1 3

External Ids for MAPKAPK5-AS1 Gene

Previous HGNC Symbols for MAPKAPK5-AS1 Gene

  • C12orf47

Previous GeneCards Identifiers for MAPKAPK5-AS1 Gene

  • GC12M112279

Summaries for MAPKAPK5-AS1 Gene

GeneCards Summary for MAPKAPK5-AS1 Gene

MAPKAPK5-AS1 (MAPKAPK5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MAPKAPK5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAPKAPK5-AS1 Gene

Genomics for MAPKAPK5-AS1 Gene

GeneHancer (GH) Regulatory Elements for MAPKAPK5-AS1 Gene

Promoters and enhancers for MAPKAPK5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I111840 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.8 816 3.7 HNRNPUL1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B GC12P111844 MAPKAPK5 MAPKAPK5-AS1 HECTD4 ATXN2 ALDH2 TRAFD1 TMEM116 RPL6 ADAM1A
GH12I111753 Enhancer 1 ENCODE dbSUPER 11 +89.5 89500 0.2 HDGF ELF3 RB1 ARID4B RAD21 RARA ARID2 ZNF143 RCOR1 THAP11 ENSG00000257767 ALDH2 MAPKAPK5 MAPKAPK5-AS1 GC12M111745 GC12M111747 ACAD10
GH12I111866 Enhancer 0.7 ENCODE dbSUPER 12.6 -25.4 -25385 2.7 MEIS2 CEBPB ZNF398 PRDM1 EZH2 GC12M111865 TMEM116 MAPKAPK5 MAPKAPK5-AS1 GC12M111872
GH12I111748 Enhancer 0.6 ENCODE dbSUPER 11 +94.1 94124 1.2 HNF4A NR2F2 MAPKAPK5 MAPKAPK5-AS1 GC12M111745 ENSG00000257767 GC12M111747 ACAD10
GH12I111904 Enhancer 0.4 ENCODE 12.1 -62.0 -61988 1 CTCF CBFA2T3 TMEM116 MAPKAPK5 MAPKAPK5-AS1 PIR61051 GC12P111923
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MAPKAPK5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAPKAPK5-AS1 Gene

Genomic Locations for MAPKAPK5-AS1 Gene
chr12:111,839,764-111,842,902
(GRCh38/hg38)
Size:
3,139 bases
Orientation:
Minus strand
chr12:112,277,571-112,280,706
(GRCh37/hg19)

Genomic View for MAPKAPK5-AS1 Gene

Genes around MAPKAPK5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAPKAPK5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPKAPK5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPKAPK5-AS1 Gene

Proteins for MAPKAPK5-AS1 Gene

  • Protein details for MAPKAPK5-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N8E1-MAAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by MAPKAPK5-AS1
    Protein Accession:
    Q8N8E1

    Protein attributes for MAPKAPK5-AS1 Gene

    Size:
    139 amino acids
    Molecular mass:
    13175 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MAPKAPK5-AS1 Gene

Post-translational modifications for MAPKAPK5-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MAPKAPK5-AS1 Gene

Domains & Families for MAPKAPK5-AS1 Gene

Protein Domains for MAPKAPK5-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MAPKAPK5-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAPKAPK5-AS1 Gene

Function for MAPKAPK5-AS1 Gene

Phenotypes From GWAS Catalog for MAPKAPK5-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPKAPK5-AS1 Gene

Localization for MAPKAPK5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAPKAPK5-AS1 Gene

Pathways & Interactions for MAPKAPK5-AS1 Gene

SuperPathways for MAPKAPK5-AS1 Gene

No Data Available

Interacting Proteins for MAPKAPK5-AS1 Gene

Gene Ontology (GO) - Biological Process for MAPKAPK5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAPKAPK5-AS1 Gene

Drugs & Compounds for MAPKAPK5-AS1 Gene

No Compound Related Data Available

Transcripts for MAPKAPK5-AS1 Gene

Unigene Clusters for MAPKAPK5-AS1 Gene

MAPKAPK5 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAPKAPK5-AS1 Gene

No ASD Table

Relevant External Links for MAPKAPK5-AS1 Gene

GeneLoc Exon Structure for
MAPKAPK5-AS1
ECgene alternative splicing isoforms for
MAPKAPK5-AS1

Expression for MAPKAPK5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAPKAPK5-AS1 Gene

SOURCE GeneReport for Unigene cluster for MAPKAPK5-AS1 Gene:

Hs.333120
genes like me logo Genes that share expression patterns with MAPKAPK5-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAPKAPK5-AS1 Gene

Orthologs for MAPKAPK5-AS1 Gene

Evolution for MAPKAPK5-AS1 Gene

ENSEMBL:
Gene Tree for MAPKAPK5-AS1 (if available)
TreeFam:
Gene Tree for MAPKAPK5-AS1 (if available)

No data available for Orthologs for MAPKAPK5-AS1 Gene

Paralogs for MAPKAPK5-AS1 Gene

No data available for Paralogs for MAPKAPK5-AS1 Gene

Variants for MAPKAPK5-AS1 Gene

Sequence variations from dbSNP and Humsavar for MAPKAPK5-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000306834 -- 111,841,570(-) C/A/G non_coding_transcript_variant
rs1000613442 -- 111,839,533(-) G/T downstream_transcript_variant
rs1000680343 -- 111,841,187(-) C/T intron_variant
rs1001047920 -- 111,839,978(-) T/C non_coding_transcript_variant
rs1001458731 -- 111,841,083(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MAPKAPK5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1556n100 CNV gain 25217958
dgv2874n54 CNV gain 21841781
dgv304e214 CNV gain 21293372
dgv514e212 CNV gain 25503493
esv2760710 CNV gain 21179565
nsv455715 CNV gain 19166990
nsv470317 CNV gain 18288195
nsv515716 CNV gain 19592680

Additional Variant Information for MAPKAPK5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAPKAPK5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAPKAPK5-AS1 Gene

Disorders for MAPKAPK5-AS1 Gene

Additional Disease Information for MAPKAPK5-AS1

No disorders were found for MAPKAPK5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAPKAPK5-AS1 Gene

Publications for MAPKAPK5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  3. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer SE … Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team (Nature 2006) 4 58

Products for MAPKAPK5-AS1 Gene

Sources for MAPKAPK5-AS1 Gene

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