Aliases for MAPK10-AS1 Gene

Subcategory (RNA class) for MAPK10-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MAPK10-AS1 Gene

  • MAPK10 Antisense RNA 1 2 3 5
  • MAPK10-AS1 2 5
  • NONHSAG038368.2 91
  • Lnc-ARHGAP24-1 165
  • HSALNG0035653 164

External Ids for MAPK10-AS1 Gene

Summaries for MAPK10-AS1 Gene

GeneCards Summary for MAPK10-AS1 Gene

MAPK10-AS1 (MAPK10 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MAPK10-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAPK10-AS1 Gene

Genomics for MAPK10-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MAPK10-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J086117 Enhancer 0.6 Ensembl ENCODE 607.7 +0.2 248 2 ATF7 SP1 RFX1 JUND FOSL2 POLR2A MAPK10-AS1 lnc-SLC10A6-5 piR-33432-389 MAPK10 PTPN13 ARHGAP24
GH04J085700 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 4.8 -416.5 -416502 2.7 BACH1 RELA TCF12 IKZF2 TRIM22 ARID3A DPF2 RELB RUNX3 BCL11A ARHGAP24 MAPK10-AS1 KR153194-149 MIR4451 PTPN13
GH04J086108 Enhancer 0.5 Ensembl 7.4 -9.5 -9511 0.8 GATAD2A JUND ZNF792 ATF1 POLR2A MAPK10-AS1 lnc-SLC10A6-5 lnc-SLC10A6-6 MAPK10 PTPN13 ARHGAP24
GH04J085702 Enhancer 0.6 FANTOM5 ENCODE dbSUPER 4.8 -414.6 -414597 0.9 ATF2 MAPK10-AS1 MIR4451 KR153194-149 ARHGAP24 PTPN13
GH04J085711 Enhancer 0.3 Ensembl dbSUPER 4.8 -405.7 -405711 2 MAPK10-AS1 MIR4451 KR153194-149 ARHGAP24 PTPN13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAPK10-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MAPK10-AS1 Gene

Genomic Locations for MAPK10-AS1 Gene
chr4:86,117,912-86,219,927
(GRCh38/hg38)
Size:
102,016 bases
Orientation:
Plus strand
chr4:87,039,065-87,141,079
(GRCh37/hg19)
Size:
102,015 bases
Orientation:
Plus strand

Genomic View for MAPK10-AS1 Gene

Genes around MAPK10-AS1 on UCSC Golden Path with GeneCards custom track
MAPK10-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MAPK10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPK10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPK10-AS1 Gene

Proteins for MAPK10-AS1 Gene

Post-translational modifications for MAPK10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAPK10-AS1 Gene

Domains & Families for MAPK10-AS1 Gene

Gene Families for MAPK10-AS1 Gene

genes like me logo Genes that share domains with MAPK10-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAPK10-AS1 Gene

Function for MAPK10-AS1 Gene

Phenotypes From GWAS Catalog for MAPK10-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPK10-AS1 Gene

Localization for MAPK10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAPK10-AS1 Gene

Pathways & Interactions for MAPK10-AS1 Gene

PathCards logo

SuperPathways for MAPK10-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MAPK10-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAPK10-AS1 Gene

Drugs & Compounds for MAPK10-AS1 Gene

No Compound Related Data Available

Transcripts for MAPK10-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MAPK10-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005943FB_9606 lncRNA 1049 4

Ensembl: ENST00000511917 (view in UCSC) ,

LncBook: HSALNT0074631,

LNCipedia: lnc-ARHGAP24-1:2,

NONCODE: NONHSAT097274.2,

URS0000258187_9606 lncRNA 766 4

Ensembl: ENST00000509322 (view in UCSC) ,

LncBook: HSALNT0074627,

LNCipedia: lnc-ARHGAP24-1:1,

NONCODE: NONHSAT097273.2,

URS000075C0BC_9606 lncRNA 957 2

HGNC: 40359,

RefSeq: NR_110879,

URS00008B65F3_9606 lncRNA 972 2

LNCipedia: lnc-ARHGAP24-1:3,

NONCODE: NONHSAT097275.2,

URS00009BA1A2_9606 lncRNA 1100 1

NONCODE: NONHSAT198793.1,

MAPK10-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MAPK10-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MAPK10-AS1 Gene

No ASD Table

Relevant External Links for MAPK10-AS1 Gene

GeneLoc Exon Structure for
MAPK10-AS1

Expression for MAPK10-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAPK10-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAPK10-AS1 Gene

Orthologs for MAPK10-AS1 Gene

Evolution for MAPK10-AS1 Gene

ENSEMBL:
Gene Tree for MAPK10-AS1 (if available)
TreeFam:
Gene Tree for MAPK10-AS1 (if available)

No data available for Orthologs for MAPK10-AS1 Gene

Paralogs for MAPK10-AS1 Gene

No data available for Paralogs for MAPK10-AS1 Gene

Variants for MAPK10-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MAPK10-AS1 Gene

SNP ID Clinical significance and condition Chr 04 pos Variation AA Info Type
793018 Likely Benign: not provided 86,194,378(+) G/A SYNONYMOUS_VARIANT,FIVE_PRIME_UTR_VARIANT
rs141835386 Uncertain Significance: not specified 86,194,381(+) G/T NONSENSE,FIVE_PRIME_UTR_VARIANT
rs373751964 Uncertain Significance: Epileptic encephalopathy 86,159,291(+) C/T INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for MAPK10-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MAPK10-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv25e194 CNV deletion 18987734
esv2727932 CNV deletion 23290073
esv2727933 CNV deletion 23290073
esv2759263 CNV loss 17122850
esv3564186 CNV deletion 23714750
esv3564187 CNV deletion 23714750
esv5249 CNV loss 18987735
nsv1003585 CNV loss 25217958
nsv1005338 CNV loss 25217958
nsv1008773 CNV loss 25217958
nsv1073348 CNV deletion 25765185
nsv1148441 CNV deletion 26484159
nsv291104 CNV deletion 16902084
nsv4408 CNV insertion 18451855
nsv594786 CNV gain 21841781
nsv956395 CNV deletion 24416366

Additional Variant Information for MAPK10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAPK10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAPK10-AS1 Gene

Disorders for MAPK10-AS1 Gene

Additional Disease Information for MAPK10-AS1

No disorders were found for MAPK10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAPK10-AS1 Gene

Publications for MAPK10-AS1 Gene

  1. Genome wide association study identifies a novel putative mammographic density locus at 1q12-q21. (PMID: 25353672) Fernandez-Navarro P … Pollan M (International journal of cancer 2015) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for MAPK10-AS1 Gene

Products for MAPK10-AS1 Gene

Sources for MAPK10-AS1 Gene