Aliases for MAP4K3-DT Gene

Subcategory (RNA class) for MAP4K3-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MAP4K3-DT Gene

  • MAP4K3 Divergent Transcript 2 3 5
  • MAP4K3-DT 2 5
  • Lnc-TMEM178A-1 165
  • HSALNG0014372 164
  • HSALNG0014370 164

External Ids for MAP4K3-DT Gene

Previous GeneCards Identifiers for MAP4K3-DT Gene

  • GC02P039438

Summaries for MAP4K3-DT Gene

GeneCards Summary for MAP4K3-DT Gene

MAP4K3-DT (MAP4K3 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MAP4K3-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAP4K3-DT Gene

Genomics for MAP4K3-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MAP4K3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J039432 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 608 +145.7 145746 7.6 HNRNPL GATAD2A PRDM10 REST ZNF629 TFE3 RFX1 LEF1 IKZF1 NFKBIZ MAP4K3-DT MAP4K3 DHX57 THUMPD2 HNRNPLL SRSF7 SOS1 TMEM178A RF00017-3171 CDKL4
GH02J039507 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.5 +222.1 222118 11.2 SP1 HNRNPL GATAD2A CTCF TFE3 LEF1 SOX13 IKZF1 RCOR2 JUND MAP4K3-DT piR-57133-335 lnc-MAP4K3-2 MAP4K3 TMEM178A
GH02J039493 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.9 +204.0 204028 2.1 CREB1 ATF7 TEAD4 ZNF629 ZNF512 JUND MTA2 ZIC2 PATZ1 IKZF2 MAP4K3-DT piR-57133-335 MAP4K3 lnc-MAP4K3-2 TMEM178A
GH02J039503 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 9.6 +214.4 214432 4.1 GATAD2A ATF7 REST TFE3 SOX13 IKZF1 NFKBIZ RCOR2 ZNF7 RXRB piR-57133-335 MAP4K3-DT TMEM178A MAP4K3 DHX57 lnc-MAP4K3-2
GH02J039522 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.3 +233.6 233635 5 GATAD2A LEF1 SOX13 IKZF1 JUND ZNF24 RXRB SP1 SOX6 CEBPA MAP4K3-DT DHX57 HNRNPLL TMEM178A piR-57133-335 lnc-MAP4K3-2 MAP4K3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAP4K3-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MAP4K3-DT Gene

Genomic Locations for MAP4K3-DT Gene
chr2:39,290,866-39,665,343
(GRCh38/hg38)
Size:
374,478 bases
Orientation:
Plus strand
chr2:39,663,778-39,892,483
(GRCh37/hg19)
Size:
228,706 bases
Orientation:
Plus strand

Genomic View for MAP4K3-DT Gene

Genes around MAP4K3-DT on UCSC Golden Path with GeneCards custom track
MAP4K3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MAP4K3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAP4K3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAP4K3-DT Gene

Proteins for MAP4K3-DT Gene

Post-translational modifications for MAP4K3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAP4K3-DT Gene

Domains & Families for MAP4K3-DT Gene

Gene Families for MAP4K3-DT Gene

genes like me logo Genes that share domains with MAP4K3-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAP4K3-DT Gene

Function for MAP4K3-DT Gene

Phenotypes From GWAS Catalog for MAP4K3-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAP4K3-DT Gene

Localization for MAP4K3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAP4K3-DT Gene

Pathways & Interactions for MAP4K3-DT Gene

PathCards logo

SuperPathways for MAP4K3-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for MAP4K3-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAP4K3-DT Gene

Drugs & Compounds for MAP4K3-DT Gene

No Compound Related Data Available

Transcripts for MAP4K3-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MAP4K3-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005B9820_9606 lncRNA 2517 4

HGNC: 54056,

RefSeq: NR_037875,

LncBook: HSALNT0030427,

LNCipedia: lnc-TMEM178A-1:6,

URS0000461181_9606 lncRNA 1438 3

Ensembl: ENST00000426083 (view in UCSC) ,

LncBook: HSALNT0030422,

LNCipedia: lnc-TMEM178A-1:2,

URS000058CE01_9606 lncRNA 523 3

Ensembl: ENST00000366187 (view in UCSC) ,

LncBook: HSALNT0030430,

LNCipedia: lnc-TMEM178A-1:16,

URS00004C5C44_9606 lncRNA 522 3

Ensembl: ENST00000443038 (view in UCSC) ,

LncBook: HSALNT0030424,

LNCipedia: lnc-TMEM178A-1:4,

URS000040141D_9606 lncRNA 1901 2

Ensembl: ENST00000438649 (view in UCSC) ,

LNCipedia: lnc-TMEM178A-1:29,

MAP4K3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MAP4K3-DT Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MAP4K3-DT Gene

No ASD Table

Relevant External Links for MAP4K3-DT Gene

GeneLoc Exon Structure for
MAP4K3-DT

Expression for MAP4K3-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAP4K3-DT

SOURCE GeneReport for Unigene cluster for MAP4K3-DT Gene:

Hs.655344
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAP4K3-DT Gene

Orthologs for MAP4K3-DT Gene

Evolution for MAP4K3-DT Gene

ENSEMBL:
Gene Tree for MAP4K3-DT (if available)
TreeFam:
Gene Tree for MAP4K3-DT (if available)

No data available for Orthologs for MAP4K3-DT Gene

Paralogs for MAP4K3-DT Gene

No data available for Paralogs for MAP4K3-DT Gene

Variants for MAP4K3-DT Gene

Additional dbSNP identifiers (rs#s) for MAP4K3-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for MAP4K3-DT Gene

Variant ID Type Subtype PubMed ID
esv2661285 CNV deletion 23128226
esv2672170 CNV deletion 23128226
esv3555333 CNV deletion 23714750
esv3590431 CNV loss 21293372
esv3590432 CNV gain 21293372
esv3590433 CNV gain 21293372
esv3590434 CNV loss 21293372
esv3590435 CNV loss 21293372
nsv215442 CNV deletion 16902084
nsv2695 CNV deletion 18451855
nsv476345 CNV novel sequence insertion 20440878
nsv833858 CNV gain 17160897
nsv997934 CNV gain 25217958

Additional Variant Information for MAP4K3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAP4K3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MAP4K3-DT Gene

Disorders for MAP4K3-DT Gene

Additional Disease Information for MAP4K3-DT

No disorders were found for MAP4K3-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAP4K3-DT Gene

Publications for MAP4K3-DT Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for MAP4K3-DT Gene

Products for MAP4K3-DT Gene

Sources for MAP4K3-DT Gene