Aliases for MAP3K20-AS1 Gene

Subcategory (RNA class) for MAP3K20-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MAP3K20-AS1 Gene

  • MAP3K20 Antisense RNA 1 2 3 5
  • MLK7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • MAP3K20-AS1 2 168
  • MLK7 Antisense RNA 1 2
  • HSALNG0020412 167
  • NONHSAG029841 92
  • MLK7-AS1 3

External Ids for MAP3K20-AS1 Gene

Previous HGNC Symbols for MAP3K20-AS1 Gene

  • MLK7-AS1

Summaries for MAP3K20-AS1 Gene

GeneCards Summary for MAP3K20-AS1 Gene

MAP3K20-AS1 (MAP3K20 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MAP3K20-AS1 include Gastric Cancer and Split-Foot Malformation With Mesoaxial Polydactyly.

Additional gene information for MAP3K20-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAP3K20-AS1 Gene

Genomics for MAP3K20-AS1 Gene

GeneHancer (GH) Regulatory Elements for MAP3K20-AS1 Gene

Promoters and enhancers for MAP3K20-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J173353 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.9 -859 4.3 EP300 HNRNPK ZBTB40 ZNF217 NRF1 TCF12 MYC POLR2G SP1 NCOR1 CDCA7 ENSG00000236391 MAP3K20-AS1 lnc-SP3-2-002 ENSG00000271151
GH02J173183 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.8 +170.7 170667 3.4 TCF12 JUND FOS ZIC2 REST CTBP1 ZEB1 OSR2 WT1 ZNF316 MAP3K20 MAP3K20-AS1 piR-41995 piR-50444-266
GH02J173209 Enhancer 1.3 Ensembl ENCODE dbSUPER 4.5 +143.9 143867 2.2 FOXK2 CTCF ZSCAN5C TCF12 USF1 JUND FOS ZNF639 REST ZNF740 MAP3K20 ENSG00000236391 CDCA7 MAP3K20-AS1 piR-41995 piR-50444-266
GH02J173213 Enhancer 1 Ensembl ENCODE dbSUPER 6 +139.7 139681 3.4 FOXA2 ZNF316 FOS ZBTB33 NFE2 JUND STAT3 MAFG RXRA MAX MAP3K20 MAP3K20-AS1 piR-41995 piR-50444-266
GH02J173158 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 4.2 +194.1 194079 3.8 TCF12 FOS POLR2A EP300 FOXA2 CEBPB ZNF263 USF1 SMARCC1 REST MAP3K20 MAP3K20-AS1 piR-50444-266 piR-41995
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAP3K20-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAP3K20-AS1 Gene

Genomic Locations for MAP3K20-AS1 Gene
chr2:173,166,446-173,354,568
(GRCh38/hg38)
Size:
188,123 bases
Orientation:
Minus strand
chr2:174,031,174-174,146,764
(GRCh37/hg19)
Size:
115,591 bases
Orientation:
Minus strand

Genomic View for MAP3K20-AS1 Gene

Genes around MAP3K20-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAP3K20-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAP3K20-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAP3K20-AS1 Gene

Proteins for MAP3K20-AS1 Gene

Post-translational modifications for MAP3K20-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAP3K20-AS1 Gene

Domains & Families for MAP3K20-AS1 Gene

Gene Families for MAP3K20-AS1 Gene

genes like me logo Genes that share domains with MAP3K20-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAP3K20-AS1 Gene

Function for MAP3K20-AS1 Gene

Phenotypes From GWAS Catalog for MAP3K20-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAP3K20-AS1 Gene

Localization for MAP3K20-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MAP3K20-AS1 gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAP3K20-AS1 Gene

Pathways & Interactions for MAP3K20-AS1 Gene

PathCards logo

SuperPathways for MAP3K20-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MAP3K20-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAP3K20-AS1 Gene

Drugs & Compounds for MAP3K20-AS1 Gene

No Compound Related Data Available

Transcripts for MAP3K20-AS1 Gene

mRNA/cDNA for MAP3K20-AS1 Gene

16 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
4 LncBook transcripts :
13 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAP3K20-AS1 Gene

No ASD Table

Relevant External Links for MAP3K20-AS1 Gene

GeneLoc Exon Structure for
MAP3K20-AS1

Expression for MAP3K20-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAP3K20-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAP3K20-AS1 Gene

Orthologs for MAP3K20-AS1 Gene

Evolution for MAP3K20-AS1 Gene

ENSEMBL:
Gene Tree for MAP3K20-AS1 (if available)
TreeFam:
Gene Tree for MAP3K20-AS1 (if available)

No data available for Orthologs for MAP3K20-AS1 Gene

Paralogs for MAP3K20-AS1 Gene

No data available for Paralogs for MAP3K20-AS1 Gene

Variants for MAP3K20-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MAP3K20-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
726848 Benign: not provided 173,266,394(-) C/T MISSENSE_VARIANT
734728 Likely Benign: not provided 173,239,483(-) G/A MISSENSE_VARIANT
736952 Likely Benign: not provided 173,217,160(-) T/C SYNONYMOUS_VARIANT
773489 Benign: not provided 173,209,827(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
775784 Benign: not provided 173,209,784(-) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for MAP3K20-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MAP3K20-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3584178 CNV loss 25503493
nsv3037 CNV insertion 18451855
nsv834460 CNV gain 17160897
nsv953517 CNV duplication 24416366

Additional Variant Information for MAP3K20-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAP3K20-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAP3K20-AS1 Gene

Disorders for MAP3K20-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for MAP3K20-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
split-foot malformation with mesoaxial polydactyly
  • sfmmp
split-hand/foot malformation 1
  • shfm1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MAP3K20-AS1

genes like me logo Genes that share disorders with MAP3K20-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MAP3K20-AS1 Gene

Publications for MAP3K20-AS1 Gene

  1. Knockdown of long non-coding RNA MAP3K20 antisense RNA 1 inhibits gastric cancer growth through epigenetically regulating miR-375. (PMID: 29428732) Quan Y … Wang X (Biochemical and biophysical research communications 2018) 2 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  3. Long noncoding RNA MLK7-AS1 promotes ovarian cancer cells progression by modulating miR-375/YAP1 axis. (PMID: 30249278) Yan H … Zhang Z (Journal of experimental & clinical cancer research : CR 2018) 3 54

Products for MAP3K20-AS1 Gene

Sources for MAP3K20-AS1 Gene