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Aliases for MAP1LC3P Gene

Subcategory (RNA class) for MAP1LC3P Gene

antisense

Aliases for MAP1LC3P Gene

  • Microtubule Associated Protein 1 Light Chain 3 Pseudogene 2 3 5
  • HsT312 3

External Ids for MAP1LC3P Gene

ORGUL Members for MAP1LC3P Gene

Previous GeneCards Identifiers for MAP1LC3P Gene

  • GC00U914009
  • GC18U900205
  • GC18P050772
  • GC18P052621

Summaries for MAP1LC3P Gene

GeneCards Summary for MAP1LC3P Gene

MAP1LC3P (Microtubule Associated Protein 1 Light Chain 3 Pseudogene) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for MAP1LC3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAP1LC3P Gene

Genomics for MAP1LC3P Gene

GeneHancer (GH) Regulatory Elements for MAP1LC3P Gene

Promoters and enhancers for MAP1LC3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J054945 Enhancer 1 ENCODE 0.4 -7.2 -7158 3.9 ZNF652 ELF3 CBFA2T2 ZNF148 CEBPG RERE ZNF24 TFE3 TRIM24 SP1 CCDC68 STARD6 MAP1LC3P ENSG00000267112
GH18J054951 Enhancer 0.3 Ensembl 0.7 -2.2 -2202 0.8 ZNF664 CCDC68 ENSG00000267311 MAP1LC3P ENSG00000267112
GH18J054949 Enhancer 0.2 Ensembl 0.7 -4.6 -4602 0.4 MAP1LC3P CCDC68 ENSG00000267112
GH18J054930 Enhancer 0.2 Ensembl 0.3 -23.5 -23502 0.2 CCDC68 MAP1LC3P ENSG00000267112
GH18J054902 Enhancer 0.2 Ensembl 0.2 -51.7 -51702 0.2 ENSG00000267112 MAP1LC3P CCDC68
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAP1LC3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAP1LC3P Gene

Genomic Locations for MAP1LC3P Gene
chr18:54,954,403-54,955,037
(GRCh38/hg38)
Size:
635 bases
Orientation:
Plus strand
chr18:52,621,634-52,622,268
(GRCh37/hg19)
Size:
635 bases
Orientation:
Plus strand

Genomic View for MAP1LC3P Gene

Genes around MAP1LC3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAP1LC3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAP1LC3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAP1LC3P Gene

Proteins for MAP1LC3P Gene

Post-translational modifications for MAP1LC3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAP1LC3P Gene

Domains & Families for MAP1LC3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAP1LC3P Gene

Function for MAP1LC3P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAP1LC3P Gene

Localization for MAP1LC3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAP1LC3P Gene

Pathways & Interactions for MAP1LC3P Gene

PathCards logo

SuperPathways for MAP1LC3P Gene

No Data Available

Interacting Proteins for MAP1LC3P Gene

Gene Ontology (GO) - Biological Process for MAP1LC3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAP1LC3P Gene

Drugs & Compounds for MAP1LC3P Gene

No Compound Related Data Available

Transcripts for MAP1LC3P Gene

mRNA/cDNA for MAP1LC3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAP1LC3P Gene

No ASD Table

Relevant External Links for MAP1LC3P Gene

GeneLoc Exon Structure for
MAP1LC3P
ECgene alternative splicing isoforms for
MAP1LC3P

Expression for MAP1LC3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAP1LC3P Gene

NURSA nuclear receptor signaling pathways regulating expression of MAP1LC3P Gene:

MAP1LC3P
genes like me logo Genes that share expression patterns with MAP1LC3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAP1LC3P Gene

Orthologs for MAP1LC3P Gene

Evolution for MAP1LC3P Gene

ENSEMBL:
Gene Tree for MAP1LC3P (if available)
TreeFam:
Gene Tree for MAP1LC3P (if available)

No data available for Orthologs for MAP1LC3P Gene

Paralogs for MAP1LC3P Gene

No data available for Paralogs for MAP1LC3P Gene

Variants for MAP1LC3P Gene

Additional Variant Information for MAP1LC3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAP1LC3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MAP1LC3P Gene

Disorders for MAP1LC3P Gene

Additional Disease Information for MAP1LC3P

Genetic Association Database
(GAD)

No disorders were found for MAP1LC3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAP1LC3P Gene

Publications for MAP1LC3P Gene

  1. Genome-wide association study identifies five new schizophrenia loci. (PMID: 21926974) Schizophrenia Psychiatric Genome-Wide Association Study (GWAS) Consortium (Nature genetics 2011) 45 58
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 45 58
  3. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D … Mitchell GF (BMC medical genetics 2007) 45 58

No data available for External Links for MAP1LC3P Gene

Products for MAP1LC3P Gene

Sources for MAP1LC3P Gene

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