Aliases for MANCR Gene

Subcategory (RNA class) for MANCR Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MANCR Gene

  • Mitotically Associated Long Non Coding RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 704 2 3
  • MANCR 2 168
  • HSALNG0075802 167
  • NONHSAG005070 92
  • LINC00704 3

External Ids for MANCR Gene

Previous HGNC Symbols for MANCR Gene

  • LINC00704

Summaries for MANCR Gene

GeneCards Summary for MANCR Gene

MANCR (Mitotically Associated Long Non Coding RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MANCR include Breast Cancer.

Additional gene information for MANCR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MANCR Gene

Genomics for MANCR Gene

GeneHancer (GH) Regulatory Elements for MANCR Gene

Promoters and enhancers for MANCR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J004669 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.5 +3.8 3770 10.5 TCF12 FOS POLR2A EP300 FOXA2 MAFF FOSL2 CEBPB PBX2 CHD2 MANCR ENSG00000229672 AKR1E2 LOC105376373 LINC00705
GH10J004700 Enhancer 1 Ensembl ENCODE dbSUPER 4.8 -25.4 -25379 6 JUND REST POLR2A FOXA2 ZNF316 FOS FOSL2 MAFK CEBPB JUN piR-41406-009 MANCR LOC105376375
GH10J004660 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.8 14821 6 FOXK2 ZNF217 ZSCAN5C TCF12 JUND FOS ZNF639 ZNF10 REST POLR2A LINC00705 LOC105376373 MANCR
GH10J004683 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -8.1 -8079 7 JUND FOS FOSL2 CEBPB USF1 NFE2 FOSL1 MITF BHLHE40 POLR2A AKR1E2 MANCR piR-41406-009 LINC00705
GH10J004656 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +20.2 20222 4 EP300 CTCF FOXA1 REST CUX1 RAD21 TRIM22 SMC3 FOXA2 CREB1 RNU6-163P KLF6 LINC00705 LOC105376373 MANCR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MANCR on UCSC Golden Path with GeneCards custom track

Genomic Locations for MANCR Gene

Genomic Locations for MANCR Gene
chr10:4,577,228-4,678,222
(GRCh38/hg38)
Size:
100,995 bases
Orientation:
Minus strand
chr10:4,692,377-4,720,346
(GRCh37/hg19)
Size:
27,970 bases
Orientation:
Minus strand

Genomic View for MANCR Gene

Genes around MANCR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MANCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MANCR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MANCR Gene

Proteins for MANCR Gene

Post-translational modifications for MANCR Gene

No Post-translational modifications

No data available for DME Specific Peptides for MANCR Gene

Domains & Families for MANCR Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MANCR Gene

Function for MANCR Gene

Phenotypes From GWAS Catalog for MANCR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MANCR Gene

Localization for MANCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MANCR Gene

Pathways & Interactions for MANCR Gene

PathCards logo

SuperPathways for MANCR Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MANCR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MANCR Gene

Drugs & Compounds for MANCR Gene

No Compound Related Data Available

Transcripts for MANCR Gene

mRNA/cDNA for MANCR Gene

27 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
15 LncBook transcripts :
20 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MANCR Gene

No ASD Table

Relevant External Links for MANCR Gene

GeneLoc Exon Structure for
MANCR

Expression for MANCR Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MANCR

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MANCR Gene

Orthologs for MANCR Gene

Evolution for MANCR Gene

ENSEMBL:
Gene Tree for MANCR (if available)
TreeFam:
Gene Tree for MANCR (if available)

No data available for Orthologs for MANCR Gene

Paralogs for MANCR Gene

No data available for Paralogs for MANCR Gene

Variants for MANCR Gene

Additional dbSNP identifiers (rs#s) for MANCR Gene

Structural Variations from Database of Genomic Variants (DGV) for MANCR Gene

Variant ID Type Subtype PubMed ID
dgv20n73 CNV deletion 24416366
dgv347n106 CNV deletion 24896259
dgv945n54 CNV gain 21841781
dgv946n54 CNV gain+loss 21841781
dgv947n54 CNV gain 21841781
dgv948n54 CNV loss 21841781
esv22743 CNV gain 19812545
esv2306271 CNV deletion 18987734
esv2527644 CNV deletion 19546169
esv2731650 CNV deletion 23290073
esv3265051 CNV deletion 24192839
esv3545805 CNV deletion 23714750
esv3622204 CNV loss 21293372
esv3781 CNV loss 18987735
esv9415 CNV loss 19470904
esv991699 CNV deletion 20482838
nsv1072110 CNV deletion 25765185
nsv1151067 CNV deletion 26484159
nsv511436 CNV loss 21212237
nsv512140 CNV loss 21212237
nsv549863 CNV gain 21841781
nsv549864 CNV gain+loss 21841781
nsv549865 CNV gain 21841781
nsv549870 CNV gain+loss 21841781
nsv549877 CNV loss 21841781
nsv820963 CNV deletion 20802225

Additional Variant Information for MANCR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MANCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MANCR Gene

Disorders for MANCR Gene

MalaCards: The human disease database

(1) MalaCards diseases for MANCR Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards
Search MANCR in MalaCards View complete list of genes associated with diseases

Additional Disease Information for MANCR

genes like me logo Genes that share disorders with MANCR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MANCR Gene

Publications for MANCR Gene

  1. Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer. (PMID: 29378907) Tracy KM … Lian JB (Molecular cancer research : MCR 2018) 2 3 54
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 54
  3. Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus. (PMID: 20662065) Clancy RM … Buyon JP (Arthritis and rheumatism 2010) 3 54
  4. LncRNA CR749391 acts as a tumor suppressor to upregulate KLF6 expression via interacting with miR-181a in gastric cancer. (PMID: 31853323) Shi S … Nie Y (Experimental and therapeutic medicine 2020) 3

Products for MANCR Gene

Sources for MANCR Gene