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Aliases for MAN1B1-DT Gene

Subcategory (RNA class) for MAN1B1-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for MAN1B1-DT Gene

  • MAN1B1 Divergent Transcript 2 3
  • MAN1B1 Antisense RNA 1 (Head To Head) 2 3 5
  • MAN1B1-AS1 3 5

External Ids for MAN1B1-DT Gene

Previous HGNC Symbols for MAN1B1-DT Gene

  • MAN1B1-AS1

Summaries for MAN1B1-DT Gene

GeneCards Summary for MAN1B1-DT Gene

MAN1B1-DT (MAN1B1 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MAN1B1-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAN1B1-DT Gene

Genomics for MAN1B1-DT Gene

GeneHancer (GH) Regulatory Elements for MAN1B1-DT Gene

Promoters and enhancers for MAN1B1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J137085 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 +0.2 200 2.9 HDGF PKNOX1 CLOCK FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B GC09M137086 MAN1B1 MAN1B1-DT DPP7 FUT7 PIR60888
GH09J137025 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 5.3 +56.2 56228 10.8 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B IRF4 YY1 FUT7 ABCA2 SNHG7 EHMT1 SEC16A ENTR1 DPH7 ANAPC2 NDOR1 MAN1B1-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MAN1B1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAN1B1-DT Gene

Genomic Locations for MAN1B1-DT Gene
chr9:137,084,946-137,086,817
(GRCh38/hg38)
Size:
1,872 bases
Orientation:
Minus strand
chr9:139,979,398-139,981,269
(GRCh37/hg19)

Genomic View for MAN1B1-DT Gene

Genes around MAN1B1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAN1B1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAN1B1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAN1B1-DT Gene

Proteins for MAN1B1-DT Gene

Post-translational modifications for MAN1B1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAN1B1-DT Gene

Domains & Families for MAN1B1-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAN1B1-DT Gene

Function for MAN1B1-DT Gene

Phenotypes From GWAS Catalog for MAN1B1-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAN1B1-DT Gene

Localization for MAN1B1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAN1B1-DT Gene

Pathways & Interactions for MAN1B1-DT Gene

SuperPathways for MAN1B1-DT Gene

No Data Available

Interacting Proteins for MAN1B1-DT Gene

Gene Ontology (GO) - Biological Process for MAN1B1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAN1B1-DT Gene

Drugs & Compounds for MAN1B1-DT Gene

No Compound Related Data Available

Transcripts for MAN1B1-DT Gene

mRNA/cDNA for MAN1B1-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAN1B1-DT Gene

No ASD Table

Relevant External Links for MAN1B1-DT Gene

GeneLoc Exon Structure for
MAN1B1-DT
ECgene alternative splicing isoforms for
MAN1B1-DT

Expression for MAN1B1-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAN1B1-DT Gene

Orthologs for MAN1B1-DT Gene

Evolution for MAN1B1-DT Gene

ENSEMBL:
Gene Tree for MAN1B1-DT (if available)
TreeFam:
Gene Tree for MAN1B1-DT (if available)

No data available for Orthologs for MAN1B1-DT Gene

Paralogs for MAN1B1-DT Gene

No data available for Paralogs for MAN1B1-DT Gene

Variants for MAN1B1-DT Gene

Sequence variations from dbSNP and Humsavar for MAN1B1-DT Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs202182837 uncertain-significance, Intellectual Disability, Recessive 137,087,182(-) C/G/T upstream_transcript_variant
rs367593587 uncertain-significance, Intellectual Disability, Recessive 137,086,979(-) C/A/T upstream_transcript_variant
rs575361734 uncertain-significance, not specified, Intellectual Disability, Recessive 137,087,212(-) C/G upstream_transcript_variant
rs776658507 uncertain-significance, Intellectual Disability, Recessive 137,087,040(-) C/T upstream_transcript_variant
rs968733 likely-benign, benign, not specified, Intellectual Disability, Recessive 137,087,175(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MAN1B1-DT Gene

Variant ID Type Subtype PubMed ID
dgv13007n54 CNV loss 21841781
esv2422220 CNV deletion 17116639
esv2761561 CNV gain 21179565
nsv469918 CNV loss 18288195
nsv524322 CNV loss 19592680
nsv616005 CNV loss 21841781
nsv616007 CNV loss 21841781
nsv825183 CNV gain 20364138
nsv831761 CNV loss 17160897
nsv951206 CNV deletion 24416366

Additional Variant Information for MAN1B1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAN1B1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAN1B1-DT Gene

Disorders for MAN1B1-DT Gene

Additional Disease Information for MAN1B1-DT

No disorders were found for MAN1B1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAN1B1-DT Gene

Publications for MAN1B1-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for MAN1B1-DT Gene

Sources for MAN1B1-DT Gene

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