Aliases for MAMDC2-AS1 Gene

Subcategory (RNA class) for MAMDC2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MAMDC2-AS1 Gene

  • MAMDC2 Antisense RNA 1 2 3 5
  • HSALNG0071768 167
  • NONHSAG052521 92
  • MAMDC2-AS1 168

External Ids for MAMDC2-AS1 Gene

Additional External Ids for MAMDC2-AS1 Gene

Previous GeneCards Identifiers for MAMDC2-AS1 Gene

  • GC09M072701
  • GC09M070086

Summaries for MAMDC2-AS1 Gene

GeneCards Summary for MAMDC2-AS1 Gene

MAMDC2-AS1 (MAMDC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MAMDC2-AS1 include Colorectal Cancer.

Additional gene information for MAMDC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAMDC2-AS1 Gene

Genomics for MAMDC2-AS1 Gene

GeneHancer (GH) Regulatory Elements for MAMDC2-AS1 Gene

Promoters and enhancers for MAMDC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J070176 Enhancer 0.2 dbSUPER 515.6 -1.7 -1748 2.3 MAMDC2-AS1 SMC5 RPL24P8 RNU2-5P MAMDC2 RF00017-7613
GH09J070255 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 15.1 -82.4 -82354 5.9 RXRA ZBTB40 ZNF217 EP300 SIN3A NRF1 POLR2G PHF8 TEAD4 PHB2 SMC5 SMC5-AS1 MAMDC2-AS1 MAMDC2 RPL24P8 piR-55194-416 RF00017-7613
GH09J070402 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 -237.0 -236965 20.2 EP300 FOXK2 HNRNPK ZBTB40 ZNF217 ZSCAN5C SIN3A NRF1 TCF12 POLR2G KLF9 SMC5 PTAR1 RPL24P8 MAMDC2 SMC5-AS1 APBA1 MAMDC2-AS1 LOC101927086 lnc-KLF9-5
GH09J070136 Enhancer 0.8 Ensembl ENCODE dbSUPER 24.8 +39.3 39288 2 EZH2 FOS JUND CTCF GATA2 JUN POLR2A MAMDC2-AS1 SMC5 piR-41195-110 piR-37297 MAMDC2 RF00017-7613
GH09J070830 Enhancer 0.7 Ensembl 30 -655.1 -655112 0.4 ZNF300 ZNF510 ZNF491 ZNF132 NFIC ZNF513 ZNF830 NFIB PRDM6 ZNF529 MAMDC2-AS1 SMC5-AS1 SMC5 RF00017-7618 MIR204 TRPM3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAMDC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAMDC2-AS1 Gene

Genomic Locations for MAMDC2-AS1 Gene
chr9:70,033,921-70,175,889
(GRCh38/hg38)
Size:
141,969 bases
Orientation:
Minus strand
chr9:72,700,732-72,790,804
(GRCh37/hg19)
Size:
90,073 bases
Orientation:
Minus strand

Genomic View for MAMDC2-AS1 Gene

Genes around MAMDC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAMDC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAMDC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAMDC2-AS1 Gene

Proteins for MAMDC2-AS1 Gene

Post-translational modifications for MAMDC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAMDC2-AS1 Gene

Domains & Families for MAMDC2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAMDC2-AS1 Gene

Function for MAMDC2-AS1 Gene

Phenotypes From GWAS Catalog for MAMDC2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAMDC2-AS1 Gene

Localization for MAMDC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAMDC2-AS1 Gene

Pathways & Interactions for MAMDC2-AS1 Gene

PathCards logo

SuperPathways for MAMDC2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MAMDC2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAMDC2-AS1 Gene

Drugs & Compounds for MAMDC2-AS1 Gene

No Compound Related Data Available

Transcripts for MAMDC2-AS1 Gene

mRNA/cDNA for MAMDC2-AS1 Gene

33 RNACentral transcripts :
2 NCBI additional mRNA sequence :
24 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
27 NONCODE transcripts :
26 LncBook transcripts :
31 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MAMDC2-AS1 Gene

No ASD Table

Relevant External Links for MAMDC2-AS1 Gene

GeneLoc Exon Structure for
MAMDC2-AS1

Expression for MAMDC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAMDC2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAMDC2-AS1

genes like me logo Genes that share expression patterns with MAMDC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAMDC2-AS1 Gene

Orthologs for MAMDC2-AS1 Gene

Evolution for MAMDC2-AS1 Gene

ENSEMBL:
Gene Tree for MAMDC2-AS1 (if available)
TreeFam:
Gene Tree for MAMDC2-AS1 (if available)

No data available for Orthologs for MAMDC2-AS1 Gene

Paralogs for MAMDC2-AS1 Gene

No data available for Paralogs for MAMDC2-AS1 Gene

Variants for MAMDC2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MAMDC2-AS1 Gene

SNP ID Clinical significance and condition Chr 09 pos Variation AA Info Type
778428 Benign: not provided 70,168,752(-) C/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
779927 Benign: not provided 70,170,561(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for MAMDC2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MAMDC2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1047862 CNV gain 25217958
nsv6553 CNV insertion 18451855

Additional Variant Information for MAMDC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAMDC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAMDC2-AS1 Gene

Disorders for MAMDC2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MAMDC2-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MAMDC2-AS1

genes like me logo Genes that share disorders with MAMDC2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MAMDC2-AS1 Gene

Publications for MAMDC2-AS1 Gene

No publications were found for MAMDC2-AS1 Gene.

Products for MAMDC2-AS1 Gene

Sources for MAMDC2-AS1 Gene