Aliases for MAGI2-AS3 Gene

Subcategory (RNA class) for MAGI2-AS3 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MAGI2-AS3 Gene

  • MAGI2 Antisense RNA 3 2 3 5
  • MAGI2 Antisense RNA 3 (Non-Protein Coding) 2 3
  • MAGI2-AS3 2 168
  • HSALNG0059170 167
  • NONHSAG048073 92

External Ids for MAGI2-AS3 Gene

Previous GeneCards Identifiers for MAGI2-AS3 Gene

  • GC07P079084

Summaries for MAGI2-AS3 Gene

GeneCards Summary for MAGI2-AS3 Gene

MAGI2-AS3 (MAGI2 Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MAGI2-AS3 include Breast Cancer and Nephrotic Syndrome, Type 15.

Additional gene information for MAGI2-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAGI2-AS3 Gene

Genomics for MAGI2-AS3 Gene

GeneHancer (GH) Regulatory Elements for MAGI2-AS3 Gene

Promoters and enhancers for MAGI2-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J079450 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 507.2 +1.1 1085 4.8 EP300 TCF12 POLR2G USF1 NCOR1 JUND FOS ZNF639 ZNF10 ZIC2 MAGI2-AS3 HQ292141 MAGI2
GH07J079280 Enhancer 1.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.6 -168.8 -168777 5.6 TCF12 JUND CTCF EP300 ZNF316 SMC3 MAFF POLR2A NR3C1 FOSL2 MAGI2-AS3 MAGI2 RF00994-1009 lnc-GNAI1-7 RF00017-6411
GH07J079290 Enhancer 1.1 FANTOM5 Ensembl ENCODE 10.6 -159.7 -159662 4.2 ZNF217 TCF12 TCF7 SKI ATF2 TBX3 FOXA2 FOS POLR2A FOSL2 lnc-GNAI1-7 MAGI2-AS3 MAGI2 RF00026-1017 RF00017-6411
GH07J079461 Enhancer 1 Ensembl ENCODE 10.9 +9.6 9626 1.6 TCF12 JUND FOS TCF7 TEAD1 ZKSCAN8 OSR2 FOXA2 CEBPB MAFF MAGI2-AS3 MAGI2 lnc-MAGI2-1
GH07J079317 Enhancer 1.2 FANTOM5 Ensembl ENCODE 8.6 -134.4 -134374 1.2 TCF12 JUND TEAD4 FOS CUX1 TEAD1 ZEB1 CTBP1 OSR2 WT1 MAGI2-AS3 MAGI2 RF00026-1017 lnc-GNAI1-7 RF00017-6411
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAGI2-AS3 Gene

Genomic Locations for MAGI2-AS3 Gene
chr7:79,452,175-79,471,961
(GRCh38/hg38)
Size:
19,787 bases
Orientation:
Plus strand
chr7:79,082,198-79,100,524
(GRCh37/hg19)
Size:
18,327 bases
Orientation:
Plus strand

Genomic View for MAGI2-AS3 Gene

Genes around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS3 Gene

Proteins for MAGI2-AS3 Gene

Post-translational modifications for MAGI2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS3 Gene

Domains & Families for MAGI2-AS3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

Function for MAGI2-AS3 Gene

Phenotypes From GWAS Catalog for MAGI2-AS3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI2-AS3 Gene

Localization for MAGI2-AS3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MAGI2-AS3 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAGI2-AS3 Gene

Pathways & Interactions for MAGI2-AS3 Gene

PathCards logo

SuperPathways for MAGI2-AS3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MAGI2-AS3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAGI2-AS3 Gene

Drugs & Compounds for MAGI2-AS3 Gene

No Compound Related Data Available

Transcripts for MAGI2-AS3 Gene

mRNA/cDNA for MAGI2-AS3 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS3 Gene

No ASD Table

Relevant External Links for MAGI2-AS3 Gene

GeneLoc Exon Structure for
MAGI2-AS3

Expression for MAGI2-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAGI2-AS3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAGI2-AS3

SOURCE GeneReport for Unigene cluster for MAGI2-AS3 Gene:

Hs.31474
genes like me logo Genes that share expression patterns with MAGI2-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAGI2-AS3 Gene

Orthologs for MAGI2-AS3 Gene

Evolution for MAGI2-AS3 Gene

ENSEMBL:
Gene Tree for MAGI2-AS3 (if available)
TreeFam:
Gene Tree for MAGI2-AS3 (if available)

No data available for Orthologs for MAGI2-AS3 Gene

Paralogs for MAGI2-AS3 Gene

No data available for Paralogs for MAGI2-AS3 Gene

Variants for MAGI2-AS3 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MAGI2-AS3 Gene

SNP ID Clinical significance and condition Chr 07 pos Variation AA Info Type
rs1135402912 Pathogenic: Nephrotic syndrome type 15 79,453,249(+) CGGGTTCCT/C FRAMESHIFT_VARIANT
rs146012909 Benign/Likely Benign: not specified; not provided 79,453,045(+) G/C NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
rs148240352 Conflicting Interpretations: not specified; not provided 79,453,102(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
rs766971610 Uncertain Significance: not provided 79,453,310(+) C/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for MAGI2-AS3 Gene

Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2764028 CNV gain+loss 21179565
nsv428175 CNV gain 18775914
nsv607659 CNV gain 21841781

Additional Variant Information for MAGI2-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI2-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAGI2-AS3 Gene

Disorders for MAGI2-AS3 Gene

MalaCards: The human disease database

(2) MalaCards diseases for MAGI2-AS3 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
nephrotic syndrome, type 15
  • nphs15
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MAGI2-AS3

genes like me logo Genes that share disorders with MAGI2-AS3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MAGI2-AS3 Gene

Publications for MAGI2-AS3 Gene

  1. Long non-coding RNA (lncRNA) MAGI2-AS3 inhibits breast cancer cell growth by targeting the Fas/FasL signalling pathway. (PMID: 29679339) Yang Y … Liu K (Human cell 2018) 2 3 54
  2. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 54
  3. Long non-coding RNA MAGI2-AS3 inhibits breast cancer cell migration and invasion via sponging microRNA-374a. (PMID: 30883342) Du S … Liu K (Cancer biomarkers : section A of Disease markers 2019) 3 54
  4. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 54
  5. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3 54

Products for MAGI2-AS3 Gene

Sources for MAGI2-AS3 Gene