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Aliases for MAGI2-AS3 Gene

Subcategory (RNA class) for MAGI2-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI2-AS3 Gene

  • MAGI2 Antisense RNA 3 2 3 5
  • MAGI2 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MAGI2-AS3 Gene

Previous GeneCards Identifiers for MAGI2-AS3 Gene

  • GC07P079084

Summaries for MAGI2-AS3 Gene

GeneCards Summary for MAGI2-AS3 Gene

MAGI2-AS3 (MAGI2 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MAGI2-AS3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI2-AS3 Gene

Genomics for MAGI2-AS3 Gene

GeneHancer (GH) Regulatory Elements for MAGI2-AS3 Gene

Promoters and enhancers for MAGI2-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I079450 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 557.3 +0.4 383 4.8 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS MAGI2-AS3 MAGI2
GH07I079280 Enhancer 1.1 FANTOM5 Ensembl ENCODE 10.6 -170.1 -170138 4.3 CTCF JUN BACH1 CEBPG RAD21 ZNF316 FOSL2 NFE2 MAFK NFE2L2 MAGI2-AS3 MAGI2 GC07M079259 RNU6-530P GC07M079344
GH07I079290 Enhancer 1 FANTOM5 ENCODE 10.6 -160.4 -160364 4.2 SOX13 FOXA2 CHD4 GATA3 RERE ATF7 FOSL2 FOS EGR2 GATAD2A MAGI2-AS3 MAGI2 GC07M079259 GC07M079344 RNU6-530P
GH07I079317 Enhancer 1.2 FANTOM5 Ensembl ENCODE 8.6 -135.1 -135095 1 ELF3 PKNOX1 FOXA2 ZEB1 ZNF366 FOS MIXL1 RXRA TSHZ1 ZEB2 MAGI2-AS3 MAGI2 GC07M079344 RNU6-530P GC07M079259
GH07I079461 Enhancer 0.8 ENCODE 10.9 +8.9 8921 1 ELF3 FOXA2 MLX ARID4B RAD21 THRB RARA FOS CREM HMG20B MAGI2-AS3 MAGI2 GC07M079546
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAGI2-AS3 Gene

Genomic Locations for MAGI2-AS3 Gene
chr7:79,452,877-79,471,208
(GRCh38/hg38)
Size:
18,332 bases
Orientation:
Plus strand
chr7:79,082,198-79,100,524
(GRCh37/hg19)

Genomic View for MAGI2-AS3 Gene

Genes around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS3 Gene

Proteins for MAGI2-AS3 Gene

Post-translational modifications for MAGI2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS3 Gene

Domains & Families for MAGI2-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

Function for MAGI2-AS3 Gene

Phenotypes From GWAS Catalog for MAGI2-AS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI2-AS3 Gene

Localization for MAGI2-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAGI2-AS3 Gene

Pathways & Interactions for MAGI2-AS3 Gene

SuperPathways for MAGI2-AS3 Gene

No Data Available

Interacting Proteins for MAGI2-AS3 Gene

Gene Ontology (GO) - Biological Process for MAGI2-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI2-AS3 Gene

Drugs & Compounds for MAGI2-AS3 Gene

No Compound Related Data Available

Transcripts for MAGI2-AS3 Gene

mRNA/cDNA for MAGI2-AS3 Gene

(9) Additional mRNA sequences :
(26) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI2-AS3 Gene

MAGI2 antisense RNA 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS3 Gene

No ASD Table

Relevant External Links for MAGI2-AS3 Gene

GeneLoc Exon Structure for
MAGI2-AS3
ECgene alternative splicing isoforms for
MAGI2-AS3

Expression for MAGI2-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAGI2-AS3 Gene

SOURCE GeneReport for Unigene cluster for MAGI2-AS3 Gene:

Hs.31474
genes like me logo Genes that share expression patterns with MAGI2-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAGI2-AS3 Gene

Orthologs for MAGI2-AS3 Gene

Evolution for MAGI2-AS3 Gene

ENSEMBL:
Gene Tree for MAGI2-AS3 (if available)
TreeFam:
Gene Tree for MAGI2-AS3 (if available)

No data available for Orthologs for MAGI2-AS3 Gene

Paralogs for MAGI2-AS3 Gene

No data available for Paralogs for MAGI2-AS3 Gene

Variants for MAGI2-AS3 Gene

Sequence variations from dbSNP and Humsavar for MAGI2-AS3 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs148240352 uncertain-significance, likely-benign, not provided, not specified 79,453,102(+) G/A genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs146012909 conflicting-interpretations-of-pathogenicity, not specified 79,453,045(+) G/C genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1000089623 -- 79,464,908(+) C/T intron_variant, non_coding_transcript_variant
rs1000173678 -- 79,456,525(+) C/A intron_variant
rs1000207817 -- 79,456,177(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS3 Gene

Variant ID Type Subtype PubMed ID
nsv607659 CNV gain 21841781
nsv428175 CNV gain 18775914
esv2764028 CNV gain+loss 21179565

Additional Variant Information for MAGI2-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI2-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAGI2-AS3 Gene

Disorders for MAGI2-AS3 Gene

Additional Disease Information for MAGI2-AS3

No disorders were found for MAGI2-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI2-AS3 Gene

Publications for MAGI2-AS3 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 58
  2. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 58
  3. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for MAGI2-AS3 Gene

Sources for MAGI2-AS3 Gene

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