Aliases for MAGI2-AS2 Gene

Subcategory (RNA class) for MAGI2-AS2 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for MAGI2-AS2 Gene

  • MAGI2 Antisense RNA 2 2 3 5
  • MAGI2 Antisense RNA 2 (Non-Protein Coding) 2 3
  • MAGI2-AS2 2 168
  • NONHSAG048069 92

External Ids for MAGI2-AS2 Gene

Previous GeneCards Identifiers for MAGI2-AS2 Gene

  • GC00U933420
  • GC07P078639

Summaries for MAGI2-AS2 Gene

GeneCards Summary for MAGI2-AS2 Gene

MAGI2-AS2 (MAGI2 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MAGI2-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAGI2-AS2 Gene

Genomics for MAGI2-AS2 Gene

GeneHancer (GH) Regulatory Elements for MAGI2-AS2 Gene

Promoters and enhancers for MAGI2-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J079055 Enhancer 0.7 Ensembl ENCODE 11.2 +47.2 47213 0.8 CTBP1 NR3C1 GATA3 NFIB ZNF384 NRF1 FOXA1 MAGI2-AS2 RF00026-1016 RNU6-337P RF00017-6411 ENSG00000229110 LOC100421387 lnc-GNAI1-8 MAGI2
GH07J078968 Enhancer 0.4 Ensembl 11.4 -39.9 -39887 0.6 YY1 POLR2A TCF12 SMARCA4 MAGI2-AS2 MAGI2-AS1 lnc-TMEM60-5 MAGI2
GH07J078852 Enhancer 0.4 Ensembl ENCODE 10.6 -155.0 -155000 2.7 ZNF384 MAGI2-AS2 piR-48553-290 piR-57461-240 MAGI2
GH07J078973 Enhancer 0.3 Ensembl 16.8 -35.2 -35187 0.4 EP300 MAGI2-AS2 lnc-TMEM60-5 MAGI2-AS1 MAGI2
GH07J078954 Enhancer 0.3 Ensembl 10.8 -54.8 -54787 0.4 JUND FOS MAGI2-AS2 MAGI2-AS1 lnc-TMEM60-5 MAGI2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAGI2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAGI2-AS2 Gene

Genomic Locations for MAGI2-AS2 Gene
chr7:79,008,988-79,012,278
(GRCh38/hg38)
Size:
3,291 bases
Orientation:
Plus strand
chr7:78,638,304-78,641,593
(GRCh37/hg19)
Size:
3,290 bases
Orientation:
Plus strand

Genomic View for MAGI2-AS2 Gene

Genes around MAGI2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS2 Gene

Proteins for MAGI2-AS2 Gene

Post-translational modifications for MAGI2-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS2 Gene

Domains & Families for MAGI2-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAGI2-AS2 Gene

Function for MAGI2-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI2-AS2 Gene

Localization for MAGI2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAGI2-AS2 Gene

Pathways & Interactions for MAGI2-AS2 Gene

PathCards logo

SuperPathways for MAGI2-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MAGI2-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAGI2-AS2 Gene

Drugs & Compounds for MAGI2-AS2 Gene

No Compound Related Data Available

Transcripts for MAGI2-AS2 Gene

mRNA/cDNA for MAGI2-AS2 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS2 Gene

No ASD Table

Relevant External Links for MAGI2-AS2 Gene

GeneLoc Exon Structure for
MAGI2-AS2

Expression for MAGI2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAGI2-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for MAGI2-AS2 Gene

This gene is overexpressed in Testis (x37.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAGI2-AS2

SOURCE GeneReport for Unigene cluster for MAGI2-AS2 Gene:

Hs.128252
genes like me logo Genes that share expression patterns with MAGI2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAGI2-AS2 Gene

Orthologs for MAGI2-AS2 Gene

Evolution for MAGI2-AS2 Gene

ENSEMBL:
Gene Tree for MAGI2-AS2 (if available)
TreeFam:
Gene Tree for MAGI2-AS2 (if available)

No data available for Orthologs for MAGI2-AS2 Gene

Paralogs for MAGI2-AS2 Gene

No data available for Paralogs for MAGI2-AS2 Gene

Variants for MAGI2-AS2 Gene

Additional dbSNP identifiers (rs#s) for MAGI2-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv471642 CNV loss 15918152
nsv521257 CNV loss 19592680
nsv5803 CNV insertion 18451855
nsv607659 CNV gain 21841781
nsv831040 CNV gain 17160897

Additional Variant Information for MAGI2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MAGI2-AS2 Gene

Disorders for MAGI2-AS2 Gene

Additional Disease Information for MAGI2-AS2

No disorders were found for MAGI2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI2-AS2 Gene

Publications for MAGI2-AS2 Gene

No publications were found for MAGI2-AS2 Gene.

Products for MAGI2-AS2 Gene

Sources for MAGI2-AS2 Gene