Aliases for MAFTRR Gene

Data sources for MAFTRR Gene:

Subcategory (RNA class) for MAFTRR Gene

lncRNA

Aliases for MAFTRR Gene

External Ids for MAFTRR Gene

Previous GeneCards Identifiers for MAFTRR Gene

  • GC16M079715

Summaries for MAFTRR Gene

GeneCards Summary for MAFTRR Gene

MAFTRR (MAF Transcriptional Regulator RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MAFTRR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAFTRR Gene

Genomics for MAFTRR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MAFTRR Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAFTRR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MAFTRR Gene

Latest Assembly
chr16:79,631,864-79,770,930
(GRCh38/hg38)
Size:
139,067 bases
Orientation:
Minus strand

Previous Assembly
chr16:79,755,209-79,804,429
(GRCh37/hg19 by Entrez Gene)
Size:
49,221 bases
Orientation:
Minus strand

chr16:79,750,622-79,804,460
(GRCh37/hg19 by Ensembl)
Size:
53,839 bases
Orientation:
Minus strand

Genomic View for MAFTRR Gene

Genes around MAFTRR on UCSC Golden Path with GeneCards custom track
MAFTRR in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MAFTRR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAFTRR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAFTRR Gene

Proteins for MAFTRR Gene

Post-translational modifications for MAFTRR Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAFTRR Gene

Domains & Families for MAFTRR Gene

Gene Families for MAFTRR Gene

genes like me logo Genes that share domains with MAFTRR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAFTRR Gene

Function for MAFTRR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAFTRR Gene

Localization for MAFTRR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAFTRR Gene

Pathways & Interactions for MAFTRR Gene

PathCards logo

SuperPathways for MAFTRR Gene

No Data Available

Gene Ontology (GO) - Biological Process for MAFTRR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAFTRR Gene

Drugs & Compounds for MAFTRR Gene

No Compound Related Data Available

Transcripts for MAFTRR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MAFTRR Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002C5603_9606 lncRNA 510 4

Ensembl: ENST00000568389 (view in UCSC) ,

LncBook: HSALNT0233987,

LNCipedia: MAFTRR:7,

NONCODE: NONHSAT143868.2,

URS00003CD6E9_9606 lncRNA 685 3

RefSeq: NR_104663,

LNCipedia: MAFTRR:6,

NONCODE: NONHSAT143864.2,

URS0000EEF75F_9606 lncRNA 2086 1

Ensembl: ENST00000668946 (view in UCSC) ,

URS0000EF2CEB_9606 lncRNA 2007 1

Ensembl: ENST00000658463 (view in UCSC) ,

URS0000EEF62E_9606 lncRNA 2004 1

Ensembl: ENST00000654454 (view in UCSC) ,

MAFTRR in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MAFTRR Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MAFTRR Gene

No ASD Table

Relevant External Links for MAFTRR Gene

GeneLoc Exon Structure for
MAFTRR

Expression for MAFTRR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAFTRR Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAFTRR

genes like me logo Genes that share expression patterns with MAFTRR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAFTRR Gene

Orthologs for MAFTRR Gene

Evolution for MAFTRR Gene

ENSEMBL:
Gene Tree for MAFTRR (if available)
TreeFam:
Gene Tree for MAFTRR (if available)

No data available for Orthologs for MAFTRR Gene

Paralogs for MAFTRR Gene

No data available for Paralogs for MAFTRR Gene

Variants for MAFTRR Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MAFTRR Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MAFTRR Gene

Variant ID Type Subtype PubMed ID
dgv865e212 CNV loss 25503493
esv1000277 CNV insertion 20482838
esv1279215 CNV insertion 17803354
esv2714761 CNV deletion 23290073
esv2714763 CNV deletion 23290073
esv3572208 CNV gain 25503493
esv3582370 CNV loss 25503493
esv3582371 CNV loss 25503493
esv3582373 CNV loss 25503493
esv3639248 CNV loss 21293372
nsv1894 CNV insertion 18451855
nsv573285 CNV gain 21841781
nsv827770 CNV gain 20364138
nsv827771 CNV loss 20364138
nsv833296 CNV loss 17160897
nsv833297 CNV gain 17160897

Additional Variant Information for MAFTRR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAFTRR

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MAFTRR Gene

Disorders for MAFTRR Gene

Additional Disease Information for MAFTRR

No disorders were found for MAFTRR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAFTRR Gene

Publications for MAFTRR Gene

  1. The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4. (PMID: 25621826) Ranzani V … Pagani M (Nature immunology 2015) 2 3
  2. Investigation of Linc-MAF-4 expression as an effective marker in brucellosis. (PMID: 32417631) Gheitasi R … Hajilooi M (Molecular immunology 2020) 3
  3. Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations. (PMID: 24852370) Zhan M … China Consortium for Genetics of Autoimmune Thyroid Disease (Human molecular genetics 2014) 3

Products for MAFTRR Gene

Sources for MAFTRR Gene