Aliases for MAFTRR Gene

Subcategory (RNA class) for MAFTRR Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MAFTRR Gene

  • MAF Transcriptional Regulator RNA 2 3 5
  • MAFTRR 2 168
  • HSALNG0112910 167
  • NONHSAG020071 92
  • NONHSAG020069 92
  • Linc-MAF-4 3
  • LincMAF4 3

External Ids for MAFTRR Gene

Previous GeneCards Identifiers for MAFTRR Gene

  • GC16M079715

Summaries for MAFTRR Gene

GeneCards Summary for MAFTRR Gene

MAFTRR (MAF Transcriptional Regulator RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MAFTRR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MAFTRR Gene

Genomics for MAFTRR Gene

GeneHancer (GH) Regulatory Elements for MAFTRR Gene

Promoters and enhancers for MAFTRR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J079717 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 42.9 +53.3 53348 2 MXI1 GATA3 CEBPG GATA2 PRDM10 CEBPB TBL1XR1 CHD2 ZNF596 SPI1 MAFTRR piR-38579-019 ENSG00000279378 LINC01229 LOC105371356
GH16J079715 Enhancer 0.9 Ensembl ENCODE dbSUPER 45.9 +55.8 55829 1.4 ZNF217 CTBP1 FOXA1 RXRA SMARCE1 RAD21 FOS SP1 YY1 MAFTRR piR-38579-019 ENSG00000279378 LINC01229 LOC105371356
GH16J079718 Enhancer 1 Ensembl ENCODE dbSUPER 35.7 +48.1 48075 7.7 USF1 FOXA2 NR2F2 CREB1 ZBTB33 JUND ZNF777 RAD21 RXRA MAX MAFTRR MAF piR-38579-019 ENSG00000279378 LINC01229 LOC105371356
GH16J079678 Enhancer 0.8 Ensembl ENCODE 23.5 +92.3 92338 0.8 ZNF217 CUX1 CTBP1 NEUROD1 NFE2 FOXA1 PKNOX1 DPF2 ZBTB40 TCF7L2 ENSG00000279378 MAFTRR LOC105371356 LINC01229 piR-38579-019
GH16J079711 Enhancer 0.5 ENCODE dbSUPER 25.6 +58.4 58414 1.1 HNF4A HNF4G MAFTRR MAF piR-38579-019 ENSG00000279378 LINC01229 LOC105371356
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MAFTRR on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAFTRR Gene

Genomic Locations for MAFTRR Gene
chr16:79,657,414-79,770,930
(GRCh38/hg38)
Size:
113,517 bases
Orientation:
Minus strand
chr16:79,750,622-79,804,460
(GRCh37/hg19)
Size:
53,839 bases
Orientation:
Minus strand

Genomic View for MAFTRR Gene

Genes around MAFTRR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAFTRR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAFTRR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAFTRR Gene

Proteins for MAFTRR Gene

Post-translational modifications for MAFTRR Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAFTRR Gene

Domains & Families for MAFTRR Gene

Gene Families for MAFTRR Gene

genes like me logo Genes that share domains with MAFTRR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MAFTRR Gene

Function for MAFTRR Gene

Phenotypes From GWAS Catalog for MAFTRR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAFTRR Gene

Localization for MAFTRR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAFTRR Gene

Pathways & Interactions for MAFTRR Gene

PathCards logo

SuperPathways for MAFTRR Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MAFTRR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MAFTRR Gene

Drugs & Compounds for MAFTRR Gene

No Compound Related Data Available

Transcripts for MAFTRR Gene

mRNA/cDNA for MAFTRR Gene

30 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
11 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
11 NONCODE transcripts :
15 LncBook transcripts :
20 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MAFTRR Gene

No ASD Table

Relevant External Links for MAFTRR Gene

GeneLoc Exon Structure for
MAFTRR

Expression for MAFTRR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAFTRR Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MAFTRR

genes like me logo Genes that share expression patterns with MAFTRR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAFTRR Gene

Orthologs for MAFTRR Gene

Evolution for MAFTRR Gene

ENSEMBL:
Gene Tree for MAFTRR (if available)
TreeFam:
Gene Tree for MAFTRR (if available)

No data available for Orthologs for MAFTRR Gene

Paralogs for MAFTRR Gene

No data available for Paralogs for MAFTRR Gene

Variants for MAFTRR Gene

Additional dbSNP identifiers (rs#s) for MAFTRR Gene

Structural Variations from Database of Genomic Variants (DGV) for MAFTRR Gene

Variant ID Type Subtype PubMed ID
dgv865e212 CNV loss 25503493
esv1000277 CNV insertion 20482838
esv1279215 CNV insertion 17803354
esv2714761 CNV deletion 23290073
esv2714763 CNV deletion 23290073
esv3572208 CNV gain 25503493
esv3582370 CNV loss 25503493
esv3582371 CNV loss 25503493
esv3582373 CNV loss 25503493
esv3639248 CNV loss 21293372
nsv1894 CNV insertion 18451855
nsv573285 CNV gain 21841781
nsv827770 CNV gain 20364138
nsv827771 CNV loss 20364138
nsv833296 CNV loss 17160897
nsv833297 CNV gain 17160897

Additional Variant Information for MAFTRR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAFTRR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MAFTRR Gene

Disorders for MAFTRR Gene

Additional Disease Information for MAFTRR

No disorders were found for MAFTRR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAFTRR Gene

Publications for MAFTRR Gene

  1. The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4. (PMID: 25621826) Ranzani V … Pagani M (Nature immunology 2015) 2 3 54
  2. Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations. (PMID: 24852370) Zhan M … China Consortium for Genetics of Autoimmune Thyroid Disease (Human molecular genetics 2014) 3 54

Products for MAFTRR Gene

Sources for MAFTRR Gene