Aliases for LZTS1-AS1 Gene

Subcategory (RNA class) for LZTS1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LZTS1-AS1 Gene

  • LZTS1 Antisense RNA 1 2 3 5
  • LZTS1-AS1 2 5 165
  • LZTS1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG049681.2 91
  • HSALNG0063799 164

External Ids for LZTS1-AS1 Gene

Previous GeneCards Identifiers for LZTS1-AS1 Gene

  • GC08P020135

Summaries for LZTS1-AS1 Gene

GeneCards Summary for LZTS1-AS1 Gene

LZTS1-AS1 (LZTS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LZTS1-AS1 Gene

Additional gene information for LZTS1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LZTS1-AS1 Gene

Genomics for LZTS1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LZTS1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J020276 Enhancer 0.9 ENCODE dbSUPER 600.7 +1.6 1580 1.5 DDX20 ZNF740 ZNF766 NFE2 E2F5 USF1 NR2C2 ZBTB11 GABPA MEF2D LZTS1-AS1 LZTS1 INTS10 RNU6-892P RNA5SP257 RF00001-321 ATP6V1B2
GH08J020278 Promoter/Enhancer 0.7 EPDnew dbSUPER 600.7 0.0 -35 0.1 USF1 POU5F1 LZTS1-AS1 LZTS1 RNU6-892P piR-57135-086 ATP6V1B2
GH08J020273 Enhancer 0.7 ENCODE dbSUPER 600.7 -1.8 -1837 1.3 GABPA POLR2A EBF1 VEZF1 SMARCA4 GATA2 ZNF639 LZTS1-AS1 LZTS1 RNU6-892P piR-57135-086 ATP6V1B2
GH08J020277 Promoter/Enhancer 0.5 Ensembl dbSUPER 600.7 -0.6 -572 0.4 LZTS1-AS1 LZTS1 RNU6-892P piR-57135-086 ATP6V1B2
GH08J020274 Enhancer 0.3 ENCODE dbSUPER 600.7 -0.8 -848 0.2 LZTS1-AS1 LZTS1 RNU6-892P piR-57135-086 ATP6V1B2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LZTS1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LZTS1-AS1 Gene

Genomic Locations for LZTS1-AS1 Gene
chr8:20,275,773-20,290,459
(GRCh38/hg38)
Size:
14,687 bases
Orientation:
Plus strand
chr8:20,133,284-20,147,969
(GRCh37/hg19)
Size:
14,686 bases
Orientation:
Plus strand

Genomic View for LZTS1-AS1 Gene

Genes around LZTS1-AS1 on UCSC Golden Path with GeneCards custom track
LZTS1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LZTS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LZTS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LZTS1-AS1 Gene

Proteins for LZTS1-AS1 Gene

Post-translational modifications for LZTS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LZTS1-AS1 Gene

Domains & Families for LZTS1-AS1 Gene

Gene Families for LZTS1-AS1 Gene

genes like me logo Genes that share domains with LZTS1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LZTS1-AS1 Gene

Function for LZTS1-AS1 Gene

Gene Ontology (GO) - Molecular Function for LZTS1-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IEA --
genes like me logo Genes that share ontologies with LZTS1-AS1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LZTS1-AS1 Gene

Localization for LZTS1-AS1 Gene

Gene Ontology (GO) - Cellular Components for LZTS1-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with LZTS1-AS1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LZTS1-AS1 Gene

Pathways & Interactions for LZTS1-AS1 Gene

PathCards logo

SuperPathways for LZTS1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LZTS1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LZTS1-AS1 Gene

Drugs & Compounds for LZTS1-AS1 Gene

No Compound Related Data Available

Transcripts for LZTS1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LZTS1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000048471C_9606 lncRNA 892 6

HGNC: 43630,

RefSeq: NR_047509,

Ensembl: ENST00000523103 (view in UCSC) ,

LncBook: HSALNT0133806,

LNCipedia: LZTS1-AS1:1,

NONCODE: NONHSAT125394.2,

URS00009AF5E9_9606 lncRNA 892 2

LncBook: HSALNT0133807,

NONCODE: NONHSAT215503.1,

LZTS1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LZTS1-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LZTS1-AS1 Gene

No ASD Table

Relevant External Links for LZTS1-AS1 Gene

GeneLoc Exon Structure for
LZTS1-AS1

Expression for LZTS1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LZTS1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for LZTS1-AS1 Gene

This gene is overexpressed in Testis (x43.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LZTS1-AS1

SOURCE GeneReport for Unigene cluster for LZTS1-AS1 Gene:

Hs.385799
genes like me logo Genes that share expression patterns with LZTS1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LZTS1-AS1 Gene

Orthologs for LZTS1-AS1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for LZTS1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 88 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia 5S_rRNA 31
  • 74 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm23702 31
  • 62 (a)
OneToOne
Species where no ortholog for LZTS1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LZTS1-AS1 Gene

ENSEMBL:
Gene Tree for LZTS1-AS1 (if available)
TreeFam:
Gene Tree for LZTS1-AS1 (if available)

Paralogs for LZTS1-AS1 Gene

No data available for Paralogs for LZTS1-AS1 Gene

Variants for LZTS1-AS1 Gene

Additional dbSNP identifiers (rs#s) for LZTS1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for LZTS1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3416047 CNV insertion 20981092
esv3616566 CNV loss 21293372
nsv1033511 CNV gain 25217958
nsv522185 CNV gain 19592680

Additional Variant Information for LZTS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LZTS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LZTS1-AS1 Gene

Disorders for LZTS1-AS1 Gene

Additional Disease Information for LZTS1-AS1

No disorders were found for LZTS1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LZTS1-AS1 Gene

Publications for LZTS1-AS1 Gene

No publications were found for LZTS1-AS1 Gene.

No data available for Mastermind for LZTS1-AS1 Gene

Products for LZTS1-AS1 Gene

Sources for LZTS1-AS1 Gene