Aliases for LYST-AS1 Gene

Subcategory (RNA class) for LYST-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LYST-AS1 Gene

  • LYST Antisense RNA 1 2 3 5
  • LYST Intronic Transcript 2 (Non-Protein Coding) 2 3
  • LYST-AS1 2 170
  • NONHSAG004729 94
  • HSALNG0011731 169
  • LYST-IT2 3

External Ids for LYST-AS1 Gene

Previous HGNC Symbols for LYST-AS1 Gene

  • LYST-IT2

Previous GeneCards Identifiers for LYST-AS1 Gene

  • GC01M236004
  • GC01P236002

Summaries for LYST-AS1 Gene

GeneCards Summary for LYST-AS1 Gene

LYST-AS1 (LYST Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LYST-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LYST-AS1 Gene

Genomics for LYST-AS1 Gene

GeneHancer (GH) Regulatory Elements for LYST-AS1 Gene

Promoters and enhancers for LYST-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J235837 Enhancer 0.3 dbSUPER 750.6 -1.4 -1411 1 IKZF1 NR2F1 LYST-AS1 RNU5E-2P LYST piR-57134-013 lnc-LYST-4
GH01J235835 Promoter/Enhancer 0.8 Ensembl ENCODE dbSUPER 0.6 -4.0 -3982 0.6 RAD21 CTCF piR-57134-013 RNU5E-2P LYST LYST-AS1 lnc-LYST-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LYST-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LYST-AS1 Gene

Genomic Locations for LYST-AS1 Gene
chr1:235,839,483-235,840,182
(GRCh38/hg38)
Size:
700 bases
Orientation:
Plus strand
chr1:236,002,783-236,003,482
(GRCh37/hg19)
Size:
700 bases
Orientation:
Plus strand

Genomic View for LYST-AS1 Gene

Genes around LYST-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LYST-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LYST-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LYST-AS1 Gene

Proteins for LYST-AS1 Gene

Post-translational modifications for LYST-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LYST-AS1 Gene

Domains & Families for LYST-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LYST-AS1 Gene

Function for LYST-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LYST-AS1 Gene

Localization for LYST-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LYST-AS1 Gene

Pathways & Interactions for LYST-AS1 Gene

PathCards logo

SuperPathways for LYST-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LYST-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LYST-AS1 Gene

Drugs & Compounds for LYST-AS1 Gene

No Compound Related Data Available

Transcripts for LYST-AS1 Gene

mRNA/cDNA for LYST-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LncBook transcripts :
(1) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LYST-AS1 Gene

No ASD Table

Relevant External Links for LYST-AS1 Gene

GeneLoc Exon Structure for
LYST-AS1
ECgene alternative splicing isoforms for
LYST-AS1

Expression for LYST-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LYST-AS1 Gene

genes like me logo Genes that share expression patterns with LYST-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LYST-AS1 Gene

Orthologs for LYST-AS1 Gene

Evolution for LYST-AS1 Gene

ENSEMBL:
Gene Tree for LYST-AS1 (if available)
TreeFam:
Gene Tree for LYST-AS1 (if available)

No data available for Orthologs for LYST-AS1 Gene

Paralogs for LYST-AS1 Gene

No data available for Paralogs for LYST-AS1 Gene

Variants for LYST-AS1 Gene

Additional Variant Information for LYST-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LYST-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LYST-AS1 Gene

Disorders for LYST-AS1 Gene

No disorders were found for LYST-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LYST-AS1 Gene

Publications for LYST-AS1 Gene

No publications were found for LYST-AS1 Gene.

No data available for External Links for LYST-AS1 Gene

Products for LYST-AS1 Gene

Sources for LYST-AS1 Gene