LYPLAL1-DT Gene (RNA Gene)

LYPLAL1 Divergent Transcript

GC01M218977
GIFtS:
9
See more...

Aliases for LYPLAL1-DT Gene

Subcategory (RNA class) for LYPLAL1-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LYPLAL1-DT Gene

  • LYPLAL1 Divergent Transcript 2 3 5
  • LYPLAL1-DT 2 5 165
  • LYPLAL1 Antisense RNA 1 (Head To Head) 2 3
  • NONHSAG004313.2 91
  • HSALNG0010632 164
  • Lnc-ZC3H11B-2 165
  • LYPLAL1-AS1 3

External Ids for LYPLAL1-DT Gene

Previous HGNC Symbols for LYPLAL1-DT Gene

  • LYPLAL1-AS1

Previous GeneCards Identifiers for LYPLAL1-DT Gene

  • GC01M219081

Summaries for LYPLAL1-DT Gene

GeneCards Summary for LYPLAL1-DT Gene

LYPLAL1-DT (LYPLAL1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LYPLAL1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LYPLAL1-DT Gene

Genomics for LYPLAL1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LYPLAL1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J219173 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.9 -909 3.7 HNRNPL CREB1 TEAD4 PRDM10 ZNF629 TFE3 IKZF1 ZNF692 POLR2A BACH1 LYPLAL1 LYPLAL1-DT lnc-LYPLAL1-1 RRP15 RPS15AP12 lnc-ZC3H11B-11 ZC3H11B
GH01J219088 Enhancer 1.2 FANTOM5 ENCODE 6.8 +84.9 84874 1.3 RFX1 LEF1 IKZF1 ZNF692 JUND DDX20 MTA2 PKNOX1 ZNF24 MTA1 LYPLAL1-DT LYPLAL1 lnc-LYPLAL1-3 TGFB2
GH01J219187 Enhancer 1 Ensembl ENCODE 7.6 -14.9 -14939 3.4 ZNF629 JUND RELA IKZF2 TRIM22 YY1 PKNOX1 ARID3A HMBOX1 DPF2 LYPLAL1-DT lnc-ZC3H11B-11 LYPLAL1 lnc-LYPLAL1-1 ZC3H11B
GH01J219277 Enhancer 1 Ensembl ENCODE 7.1 -105.0 -104983 3.3 PRDM10 ZNF629 ZNF692 FOXA1 ZSCAN4 ZNF600 ZNF37A ZNF561 SCRT2 SP1 RAB3GAP2 LYPLAL1-DT LYPLAL1 ENSG00000277007 piR-31199-018 lnc-LYPLAL1-1 ZC3H11B
GH01J219119 Enhancer 1.1 Ensembl ENCODE 5.1 +53.0 52962 2.8 ZNF512 RFX1 LEF1 IKZF1 JUND MTA2 PKNOX1 ZNF24 NR2C1 ZNF740 RRP15 RIMKLBP2 LYPLAL1-DT LYPLAL1 lnc-LYPLAL1-3 TGFB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LYPLAL1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LYPLAL1-DT Gene

Genomic Locations for LYPLAL1-DT Gene
chr1:218,976,747-219,173,962
(GRCh38/hg38)
Size:
197,216 bases
Orientation:
Minus strand
chr1:219,254,315-219,347,303
(GRCh37/hg19)
Size:
92,989 bases
Orientation:
Minus strand

Genomic View for LYPLAL1-DT Gene

Genes around LYPLAL1-DT on UCSC Golden Path with GeneCards custom track
LYPLAL1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LYPLAL1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LYPLAL1-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LYPLAL1-DT Gene

Proteins for LYPLAL1-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LYPLAL1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LYPLAL1-DT Gene

Domains & Families for LYPLAL1-DT Gene

Gene Families for LYPLAL1-DT Gene

HGNC:
genes like me logo Genes that share domains with LYPLAL1-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LYPLAL1-DT Gene

Function for LYPLAL1-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LYPLAL1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LYPLAL1-DT Gene

Localization for LYPLAL1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LYPLAL1-DT Gene

Pathways & Interactions for LYPLAL1-DT Gene

PathCards logo

SuperPathways for LYPLAL1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for LYPLAL1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LYPLAL1-DT Gene

Drugs & Compounds for LYPLAL1-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LYPLAL1-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LYPLAL1-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B5F8_9606 lncRNA 1627 2

HGNC: 50560,

RefSeq: NR_038845,

URS0000EF3303_9606 lncRNA 2577 1

Ensembl: ENST00000668290 (view in UCSC) ,

URS0000EF526B_9606 lncRNA 2385 1

Ensembl: ENST00000654859 (view in UCSC) ,

URS0000EF248C_9606 lncRNA 2088 1

Ensembl: ENST00000657470 (view in UCSC) ,

URS0000EEAFA7_9606 lncRNA 2045 1

Ensembl: ENST00000669535 (view in UCSC) ,

LYPLAL1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LYPLAL1-DT Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LYPLAL1-DT Gene

No ASD Table

Relevant External Links for LYPLAL1-DT Gene

GeneLoc Exon Structure for
LYPLAL1-DT

Expression for LYPLAL1-DT Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LYPLAL1-DT Gene

Orthologs for LYPLAL1-DT Gene

Evolution for LYPLAL1-DT Gene

ENSEMBL:
Gene Tree for LYPLAL1-DT (if available)
TreeFam:
Gene Tree for LYPLAL1-DT (if available)

No data available for Orthologs for LYPLAL1-DT Gene

Paralogs for LYPLAL1-DT Gene

No data available for Paralogs for LYPLAL1-DT Gene

Variants for LYPLAL1-DT Gene

Additional dbSNP identifiers (rs#s) for LYPLAL1-DT Gene

Additional Variant Information for LYPLAL1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LYPLAL1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LYPLAL1-DT Gene

Disorders for LYPLAL1-DT Gene

Additional Disease Information for LYPLAL1-DT

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LYPLAL1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LYPLAL1-DT Gene

Publications for LYPLAL1-DT Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LYPLAL1-DT Gene

Products for LYPLAL1-DT Gene

Sources for LYPLAL1-DT Gene