Aliases for LYPLAL1-AS1 Gene

Subcategory (RNA class) for LYPLAL1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LYPLAL1-AS1 Gene

  • LYPLAL1 Antisense RNA 1 2 3 5
  • LYPLAL1-AS1 2 5
  • NONHSAG004323.2 91
  • NONHSAG004322.2 91
  • HSALNG0010664 164
  • Lnc-ZC3H11B-1 165

External Ids for LYPLAL1-AS1 Gene

Previous GeneCards Identifiers for LYPLAL1-AS1 Gene

  • GC01M219080

Summaries for LYPLAL1-AS1 Gene

GeneCards Summary for LYPLAL1-AS1 Gene

LYPLAL1-AS1 (LYPLAL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LYPLAL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LYPLAL1-AS1 Gene

Genomics for LYPLAL1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LYPLAL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J219458 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 608.3 +95.0 95023 8.6 SP1 STAT3 IKZF2 TRIM22 YY1 POLR2A PKNOX1 EED ARID3A DPF2 LYPLAL1-AS1 lnc-LYPLAL1-9 lnc-LYPLAL1-2 ZC3H11B LYPLAL1
GH01J219555 Enhancer 1 FANTOM5 Ensembl ENCODE 605.6 +1.5 1523 2 FOXA1 CEBPB ZBTB20 SP1 RUNX3 CTBP1 ZNF217 FOSL2 DPF2 JUND LYPLAL1-AS1 ENSG00000238232 piR-42700-011 ZC3H11B LYPLAL1
GH01J219443 Promoter/Enhancer 0.6 EPDnew dbSUPER 600.1 +114.7 114650 0.1 POLR2A lnc-LYPLAL1-2 LYPLAL1-AS1 LOC107984018 ZC3H11B LYPLAL1
GH01J219422 Enhancer 0.7 Ensembl dbSUPER 4.8 +134.3 134250 0.9 IKZF2 RELB RUNX3 TCF12 BCL11A BATF MAFK ATF2 MTA2 MAX LYPLAL1-AS1 LOC107984018 piR-33303-015 ZC3H11B LYPLAL1
GH01J219489 Enhancer 0.5 Ensembl 6.9 +67.1 67123 2 RUNX3 BCL11A IKZF1 NR2F1 MTA2 LYPLAL1-AS1 LOC107985272 piR-42700-011 ZC3H11B LYPLAL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LYPLAL1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LYPLAL1-AS1 Gene

Genomic Locations for LYPLAL1-AS1 Gene
chr1:219,401,596-219,557,324
(GRCh38/hg38)
Size:
155,729 bases
Orientation:
Minus strand

Genomic View for LYPLAL1-AS1 Gene

Genes around LYPLAL1-AS1 on UCSC Golden Path with GeneCards custom track
LYPLAL1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LYPLAL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LYPLAL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LYPLAL1-AS1 Gene

Proteins for LYPLAL1-AS1 Gene

Post-translational modifications for LYPLAL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LYPLAL1-AS1 Gene

Domains & Families for LYPLAL1-AS1 Gene

Gene Families for LYPLAL1-AS1 Gene

genes like me logo Genes that share domains with LYPLAL1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LYPLAL1-AS1 Gene

Function for LYPLAL1-AS1 Gene

Phenotypes From GWAS Catalog for LYPLAL1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LYPLAL1-AS1 Gene

Localization for LYPLAL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LYPLAL1-AS1 Gene

Pathways & Interactions for LYPLAL1-AS1 Gene

PathCards logo

SuperPathways for LYPLAL1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LYPLAL1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LYPLAL1-AS1 Gene

Drugs & Compounds for LYPLAL1-AS1 Gene

No Compound Related Data Available

Transcripts for LYPLAL1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LYPLAL1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000AB01EC_9606 lncRNA 1087 3

Ensembl: ENST00000441790 (view in UCSC) ,

LncBook: HSALNT0022120,

LNCipedia: lnc-ZC3H11B-1:8,

URS000050755D_9606 lncRNA 451 3

Ensembl: ENST00000420762 (view in UCSC) ,

LNCipedia: lnc-ZC3H11B-1:15,

NONCODE: NONHSAT009556.2,

URS0000AA03B4_9606 lncRNA 891 2

Ensembl: ENST00000640010 (view in UCSC) ,

LNCipedia: lnc-ZC3H11B-1:7,

URS0000A77289_9606 lncRNA 687 2

HGNC: 54054,

RefSeq: NR_135822,

URS0000EF621E_9606 lncRNA 1874 1

Ensembl: ENST00000653604 (view in UCSC) ,

LYPLAL1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LYPLAL1-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LYPLAL1-AS1 Gene

No ASD Table

Relevant External Links for LYPLAL1-AS1 Gene

GeneLoc Exon Structure for
LYPLAL1-AS1

Expression for LYPLAL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LYPLAL1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LYPLAL1-AS1

genes like me logo Genes that share expression patterns with LYPLAL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LYPLAL1-AS1 Gene

Orthologs for LYPLAL1-AS1 Gene

Evolution for LYPLAL1-AS1 Gene

ENSEMBL:
Gene Tree for LYPLAL1-AS1 (if available)
TreeFam:
Gene Tree for LYPLAL1-AS1 (if available)

No data available for Orthologs for LYPLAL1-AS1 Gene

Paralogs for LYPLAL1-AS1 Gene

No data available for Paralogs for LYPLAL1-AS1 Gene

Variants for LYPLAL1-AS1 Gene

Additional dbSNP identifiers (rs#s) for LYPLAL1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for LYPLAL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1010912 CNV loss 25217958

Additional Variant Information for LYPLAL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LYPLAL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LYPLAL1-AS1 Gene

Disorders for LYPLAL1-AS1 Gene

No disorders were found for LYPLAL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LYPLAL1-AS1 Gene

Publications for LYPLAL1-AS1 Gene

No publications were found for LYPLAL1-AS1 Gene.

Products for LYPLAL1-AS1 Gene

Sources for LYPLAL1-AS1 Gene