Aliases for LYPLA2P1 Gene

Aliases for LYPLA2P1 Gene

  • LYPLA2 Pseudogene 1 2 3 5
  • Lysophospholipase II Pseudogene 1 2 3
  • Lysophospholipase 2 Like 2 3
  • DJ570F3.6 (Novel Protein Similar To Lysophospholipase II (LYPLA2)) 3
  • DJ570F3.6 3
  • LYPLA2L 3
  • APT 3

External Ids for LYPLA2P1 Gene

Previous HGNC Symbols for LYPLA2P1 Gene

  • LYPLA2L

Previous GeneCards Identifiers for LYPLA2P1 Gene

  • GC06M033333
  • GC06M033379
  • GC06M033440
  • GC06Mf33405
  • GC06M033332
  • GC06M033074

Summaries for LYPLA2P1 Gene

GeneCards Summary for LYPLA2P1 Gene

LYPLA2P1 (LYPLA2 Pseudogene 1) is a Pseudogene.

Additional gene information for LYPLA2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LYPLA2P1 Gene

Genomics for LYPLA2P1 Gene

GeneHancer (GH) Regulatory Elements for LYPLA2P1 Gene

Promoters and enhancers for LYPLA2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033364 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 500.7 +1.5 1519 1.6 CTCF ZIC2 HES1 CTBP1 HINFP NFRKB MAX ZNF592 E2F6 ZNF335 LYPLA2P1 DAXX piR-32861-064 RF00017-5432 RF00017-5429 RF00017-5431
GH06J032951 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 5.8 +412.9 412875 4.6 ZNF217 CTCF SIN3A SP1 TEAD4 POLR2A FOS TRIM28 SAP30 RFX1 HLA-DMA ENSG00000248993 RING1 TAP1 PSMB9 ENSG00000250264 TAP2 HLA-DOB HLA-DRB6 HLA-DPA1
GH06J033373 Enhancer 0.9 ENCODE 0.4 -9.1 -9112 3.1 ZBTB5 ZBTB10 REST CTBP1 TRIM25 HINFP HDAC3 NCOR1 RELA CEBPB DAXX PHF1 ZBTB22 TAPBP RGL2 PFDN6 WDR46 ZBTB9 RF00017-5433 LYPLA2P1
GH06J033362 Enhancer 0.4 ENCODE 0.7 +4.0 4043 0.2 CUX1 ELF1 FOXA1 DAXX KIFC1 RPL35AP4 HLA-DMA CUTA SYNGAP1 LYPLA2P1 piR-32861-064 RF00017-5432 RF00017-5429
GH06J033372 Enhancer 0.6 CraniofacialAtlas 0.4 -6.4 -6362 0.6 OSR2 ZBTB17 PBX2 GATA3 PRDM6 MITF GATA2 ZSCAN21 ZNF770 ZSCAN30 CUTA LYPLA2P1 RF00017-5433 RF00017-5432 RF00017-5429 RF00017-5431
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LYPLA2P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LYPLA2P1 gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • E47
  • NF-kappaB
  • NF-kappaB1
  • NF-kappaB2

Genomic Locations for LYPLA2P1 Gene

Genomic Locations for LYPLA2P1 Gene
chr6:33,364,724-33,366,362
(GRCh38/hg38)
Size:
1,639 bases
Orientation:
Minus strand
chr6:33,332,501-33,334,139
(GRCh37/hg19)
Size:
1,639 bases
Orientation:
Minus strand

Genomic View for LYPLA2P1 Gene

Genes around LYPLA2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LYPLA2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LYPLA2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LYPLA2P1 Gene

Proteins for LYPLA2P1 Gene

Post-translational modifications for LYPLA2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LYPLA2P1 Gene

Domains & Families for LYPLA2P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LYPLA2P1 Gene

Function for LYPLA2P1 Gene

Phenotypes From GWAS Catalog for LYPLA2P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LYPLA2P1 Gene

Localization for LYPLA2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LYPLA2P1 Gene

Pathways & Interactions for LYPLA2P1 Gene

PathCards logo

SuperPathways for LYPLA2P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LYPLA2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LYPLA2P1 Gene

Drugs & Compounds for LYPLA2P1 Gene

No Compound Related Data Available

Transcripts for LYPLA2P1 Gene

mRNA/cDNA for LYPLA2P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LYPLA2P1 Gene

No ASD Table

Relevant External Links for LYPLA2P1 Gene

GeneLoc Exon Structure for
LYPLA2P1

Expression for LYPLA2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LYPLA2P1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LYPLA2P1

genes like me logo Genes that share expression patterns with LYPLA2P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LYPLA2P1 Gene

Orthologs for LYPLA2P1 Gene

Evolution for LYPLA2P1 Gene

ENSEMBL:
Gene Tree for LYPLA2P1 (if available)
TreeFam:
Gene Tree for LYPLA2P1 (if available)

No data available for Orthologs for LYPLA2P1 Gene

Paralogs for LYPLA2P1 Gene

No data available for Paralogs for LYPLA2P1 Gene

Variants for LYPLA2P1 Gene

Additional Variant Information for LYPLA2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LYPLA2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LYPLA2P1 Gene

Disorders for LYPLA2P1 Gene

Additional Disease Information for LYPLA2P1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for LYPLA2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LYPLA2P1 Gene

Publications for LYPLA2P1 Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 41 54
  2. Involvement of the Src homology 2-containing tyrosine phosphatase SHP-2 in growth hormone signaling. (PMID: 9442080) Kim SO … Frank SJ (The Journal of biological chemistry 1998) 3 54

Products for LYPLA2P1 Gene

Sources for LYPLA2P1 Gene