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Aliases for LYNX1-SLURP2 Gene

Aliases for LYNX1-SLURP2 Gene

  • LYNX1-SLURP2 Readthrough 2 3
  • AC083841.5 5

External Ids for LYNX1-SLURP2 Gene

Summaries for LYNX1-SLURP2 Gene

Entrez Gene Summary for LYNX1-SLURP2 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring LYNX1 and SLURP2 genes. The readthrough transcript encodes a fusion protein comprised of sequence sharing identity with each individual gene product. The significance of this read-through transcription and the function of the resulting protein product have not yet been determined. [provided by RefSeq, Sep 2017]

GeneCards Summary for LYNX1-SLURP2 Gene

LYNX1-SLURP2 (LYNX1-SLURP2 Readthrough) is a Protein Coding gene. An important paralog of this gene is SLURP2.

Additional gene information for LYNX1-SLURP2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LYNX1-SLURP2 Gene

Genomics for LYNX1-SLURP2 Gene

GeneHancer (GH) Regulatory Elements for LYNX1-SLURP2 Gene

Promoters and enhancers for LYNX1-SLURP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I142776 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 550.8 +0.7 703 2.1 KLF17 SIN3A DEAF1 DMAP1 ZNF48 RAD21 RARA YY1 ZNF335 EGR1 LYNX1 LYNX1-SLURP2 THEM6 TSTA3 SLURP2
GH08I142782 Enhancer 1 Ensembl ENCODE dbSUPER 0.8 -4.4 -4377 0.4 ZBTB10 CTCF ZNF654 MAZ RB1 REST RAD21 KLF16 ZNF143 SMC3 LYNX1 LY6D LYNX1-SLURP2 ENSG00000253715
GH08I142769 Promoter 0.8 EPDnew 0.4 +8.4 8376 0.1 E2F1 JUND FOSL2 FOS SLURP2 LYNX1 LYNX1-SLURP2
GH08I142762 Enhancer 0.8 ENCODE 0.4 +14.7 14676 1.9 ELF3 PKNOX1 FOXA2 MLX ZSCAN9 RAD21 RARA ETS1 ATF7 CREM ENSG00000253196 LYNX1 THEM6 GC08M142771 PIR62770 SLURP2 LYNX1-SLURP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LYNX1-SLURP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LYNX1-SLURP2 Gene

Genomic Locations for LYNX1-SLURP2 Gene
chr8:142,764,334-142,778,224
(GRCh38/hg38)
Size:
13,891 bases
Orientation:
Minus strand

Genomic View for LYNX1-SLURP2 Gene

Genes around LYNX1-SLURP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LYNX1-SLURP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LYNX1-SLURP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LYNX1-SLURP2 Gene

Proteins for LYNX1-SLURP2 Gene

  • Protein details for LYNX1-SLURP2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    G3V0Z9
    Recommended name:
    HCG2043033, isoform CRA_b
    Protein Accession:
    G3V0Z9

    Protein attributes for LYNX1-SLURP2 Gene

    Size:
    82 amino acids
    Molecular mass:
    8974 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LYNX1-SLURP2 Gene

Post-translational modifications for LYNX1-SLURP2 Gene

No Post-translational modifications

Other Protein References for LYNX1-SLURP2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LYNX1-SLURP2 Gene

Domains & Families for LYNX1-SLURP2 Gene

Protein Domains for LYNX1-SLURP2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LYNX1-SLURP2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LYNX1-SLURP2 Gene

Function for LYNX1-SLURP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LYNX1-SLURP2 Gene

Localization for LYNX1-SLURP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LYNX1-SLURP2 Gene

Pathways & Interactions for LYNX1-SLURP2 Gene

SuperPathways for LYNX1-SLURP2 Gene

No Data Available

Interacting Proteins for LYNX1-SLURP2 Gene

Gene Ontology (GO) - Biological Process for LYNX1-SLURP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LYNX1-SLURP2 Gene

Drugs & Compounds for LYNX1-SLURP2 Gene

No Compound Related Data Available

Transcripts for LYNX1-SLURP2 Gene

mRNA/cDNA for LYNX1-SLURP2 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LYNX1-SLURP2 Gene

No ASD Table

Relevant External Links for LYNX1-SLURP2 Gene

GeneLoc Exon Structure for
LYNX1-SLURP2
ECgene alternative splicing isoforms for
LYNX1-SLURP2

Expression for LYNX1-SLURP2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LYNX1-SLURP2 Gene

Orthologs for LYNX1-SLURP2 Gene

Evolution for LYNX1-SLURP2 Gene

ENSEMBL:
Gene Tree for LYNX1-SLURP2 (if available)
TreeFam:
Gene Tree for LYNX1-SLURP2 (if available)

No data available for Orthologs for LYNX1-SLURP2 Gene

Paralogs for LYNX1-SLURP2 Gene

Paralogs for LYNX1-SLURP2 Gene

genes like me logo Genes that share paralogs with LYNX1-SLURP2: view

Variants for LYNX1-SLURP2 Gene

Additional Variant Information for LYNX1-SLURP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LYNX1-SLURP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LYNX1-SLURP2 Gene

Disorders for LYNX1-SLURP2 Gene

No disorders were found for LYNX1-SLURP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LYNX1-SLURP2 Gene

Publications for LYNX1-SLURP2 Gene

  1. Transcriptional regulation of SLURP2, a psoriasis-associated gene, is under control of IL-22 in the skin: A special reference to the nested gene LYNX1. (PMID: 26033490) Moriwaki Y … Misawa H (International immunopharmacology 2015) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LYNX1-SLURP2 Gene

Sources for LYNX1-SLURP2 Gene

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