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LY6G6F Gene(Protein Coding)

Lymphocyte Antigen 6 Family Member G6F

GCID:
GC06P031706
GIFtS:
43
Genes Participants
UDN Logo

Aliases for LY6G6F Gene

Aliases for LY6G6F Gene

  • Lymphocyte Antigen 6 Family Member G6F 2 3 5
  • Lymphocyte Antigen 6 Complex, Locus G6F 2 3
  • C6orf21 3 4
  • LY6G6D 3 4
  • NG32 3 4
  • G6f 3 4
  • Lymphocyte Antigen 6 Complex Locus Protein G6f 3
  • Lymphocyte Antigen 6 Complex, Locus G6D 3
  • Chromosome 6 Open Reading Frame 21 2
  • LY6G6 3

External Ids for LY6G6F Gene

Previous HGNC Symbols for LY6G6F Gene

  • LY6G6D
  • C6orf21

Previous GeneCards Identifiers for LY6G6F Gene

  • GC06P031784
  • GC06P031674
  • GC06P031460

Summaries for LY6G6F Gene

Entrez Gene Summary for LY6G6F Gene

  • The human G6f protein is a type I transmembrane protein belonging to the immunoglobin (Ig) superfamily, which is comprised of cell-surface proteins involved in the immune system and cellular recognition (de Vet et al., 2003 [PubMed 12852788]).[supplied by OMIM, Mar 2008]

GeneCards Summary for LY6G6F Gene

LY6G6F (Lymphocyte Antigen 6 Family Member G6F) is a Protein Coding gene. Among its related pathways are Response to elevated platelet cytosolic Ca2+. An important paralog of this gene is LY6G6F-LY6G6D.

UniProtKB/Swiss-Prot for LY6G6F Gene

  • May play a role in the downstream signal transduction pathways involving GRB2 and GRB7.

Additional gene information for LY6G6F Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LY6G6F Gene

Genomics for LY6G6F Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LY6G6F Gene

Promoters and enhancers for LY6G6F Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06I031706 Promoter 0.9 EPDnew 550.8 0.0 -21 0.1 PKNOX1 L3MBTL2 CBFA2T3 EP300 RELA ZNF592 MEF2D SMARCA4 IKZF1 ID3 LY6G6F LY6G6F-LY6G6D ABHD16A ENSG00000204422
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LY6G6F on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LY6G6F gene promoter:

Genomic Locations for LY6G6F Gene

Genomic Locations for LY6G6F Gene
chr6:31,706,885-31,710,595
(GRCh38/hg38)
Size:
3,711 bases
Orientation:
Plus strand
chr6:31,674,640-31,685,581
(GRCh37/hg19)

Genomic View for LY6G6F Gene

Genes around LY6G6F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LY6G6F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LY6G6F Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LY6G6F Gene

Proteins for LY6G6F Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for LY6G6F Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SQ64-LY66F_HUMAN
    Recommended name:
    Lymphocyte antigen 6 complex locus protein G6f
    Protein Accession:
    Q5SQ64
    Secondary Accessions:
    • B0UXB7
    • O95869
    • Q7Z5H2
    • Q96QC7
    • Q9NZJ1

    Protein attributes for LY6G6F Gene

    Size:
    297 amino acids
    Molecular mass:
    32465 Da
    Quaternary structure:
    • Homodimer; disulfide-linked. Interacts with GRB2 and GRB7 in a phosphorylation-dependent manner.
    SequenceCaution:
    • Sequence=AAD18078.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=BAB63382.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for LY6G6F Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LY6G6F Gene

Protein Expression for LY6G6F Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for LY6G6F Gene

Other Protein References for LY6G6F Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LY6G6F Gene

Domains & Families for LY6G6F Gene

Gene Families for LY6G6F Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for LY6G6F Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for LY6G6F Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LY6G6F: view

No data available for UniProtKB/Swiss-Prot for LY6G6F Gene

Function for LY6G6F Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for LY6G6F Gene

UniProtKB/Swiss-Prot Function:
May play a role in the downstream signal transduction pathways involving GRB2 and GRB7.

Phenotypes From GWAS Catalog for LY6G6F Gene

Phenotypes for LY6G6F Gene

GenomeRNAi human phenotypes for LY6G6F:
genes like me logo Genes that share phenotypes with LY6G6F: view

Animal Model Products

  • Taconic Biosciences Mouse Models for LY6G6F

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LY6G6F Gene

Localization for LY6G6F Gene

Subcellular locations from UniProtKB/Swiss-Prot for LY6G6F Gene

Cell membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LY6G6F gene
Compartment Confidence
plasma membrane 5
extracellular 2
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for LY6G6F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0031092 platelet alpha granule membrane TAS --
genes like me logo Genes that share ontologies with LY6G6F: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for LY6G6F Gene

Pathways & Interactions for LY6G6F Gene

genes like me logo Genes that share pathways with LY6G6F: view

Gene Ontology (GO) - Biological Process for LY6G6F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002576 platelet degranulation TAS --
genes like me logo Genes that share ontologies with LY6G6F: view

No data available for SIGNOR curated interactions for LY6G6F Gene

Drugs & Compounds for LY6G6F Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LY6G6F Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LY6G6F Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LY6G6F Gene

Lymphocyte antigen 6 complex, locus G6F:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LY6G6F Gene

No ASD Table

Relevant External Links for LY6G6F Gene

GeneLoc Exon Structure for
LY6G6F
ECgene alternative splicing isoforms for
LY6G6F

Expression for LY6G6F Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LY6G6F Gene

mRNA expression in normal human tissues for LY6G6F Gene
mRNA expression by GTEx for LY6G6F Gene

mRNA differential expression in normal tissues according to GTEx for LY6G6F Gene

This gene is overexpressed in Whole Blood (x45.1).

Protein differential expression in normal tissues from HIPED for LY6G6F Gene

This gene is overexpressed in Platelet (32.0), Peripheral blood mononuclear cells (23.1), and Serum (12.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for LY6G6F Gene



Protein tissue co-expression partners for LY6G6F Gene

NURSA nuclear receptor signaling pathways regulating expression of LY6G6F Gene:

LY6G6F

SOURCE GeneReport for Unigene cluster for LY6G6F Gene:

Hs.591794

Evidence on tissue expression from TISSUES for LY6G6F Gene

  • Blood(4.3)
genes like me logo Genes that share expression patterns with LY6G6F: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for LY6G6F Gene

Orthologs for LY6G6F Gene

This gene was present in the common ancestor of chordates.

Orthologs for LY6G6F Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia LY6G6F 33
  • 99.55 (n)
-- 34
  • 87 (a)
 OneToMany
dog
(Canis familiaris)
 Mammalia LY6G6F 33
  • 83.39 (n)
-- 34
  • 81 (a)
 ManyToMany
cow
(Bos Taurus)
 Mammalia LY6G6F 33
  • 83.16 (n)
mouse
(Mus musculus)
 Mammalia Ly6g6f 33 16
  • 77.55 (n)
rat
(Rattus norvegicus)
 Mammalia Ly6g6f 33
  • 75.15 (n)
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 34
  • 42 (a)
 OneToMany
oppossum
(Monodelphis domestica)
 Mammalia -- 34
  • 41 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia -- 34
  • 27 (a)
 OneToMany
Species where no ortholog for LY6G6F was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LY6G6F Gene

ENSEMBL:
Gene Tree for LY6G6F (if available)
TreeFam:
Gene Tree for LY6G6F (if available)

Paralogs for LY6G6F Gene

Paralogs for LY6G6F Gene

(1) SIMAP similar genes for LY6G6F Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LY6G6F: view

Variants for LY6G6F Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LY6G6F Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000387479 -- 31,707,808(+) C/A intron_variant
rs1001054854 -- 31,708,875(+) A/G intron_variant
rs1001727819 -- 31,705,200(+) A/G upstream_transcript_variant
rs1002417139 -- 31,706,888(+) A/G upstream_transcript_variant
rs1003857525 -- 31,706,696(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LY6G6F Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv1161370 CNV deletion 26073780

Variation tolerance for LY6G6F Gene

Residual Variation Intolerance Score: 94.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.42; 90.91% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LY6G6F Gene

Human Gene Mutation Database (HGMD)
LY6G6F
SNPedia medical, phenotypic, and genealogical associations of SNPs for
LY6G6F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LY6G6F Gene

Disorders for LY6G6F Gene

Additional Disease Information for LY6G6F

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LY6G6F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LY6G6F Gene

Publications for LY6G6F Gene

  1. Adaptor signalling proteins Grb2 and Grb7 are recruited by human G6f, a novel member of the immunoglobulin superfamily encoded in the MHC. (PMID: 12852788) De Vet EC … Campbell RD (The Biochemical journal 2003) 2 3 4 22 58
  2. Examination of genetic polymorphisms in newborns for signatures of sex-specific prenatal selection. (PMID: 20587610) Ucisik-Akkaya E … Dorak MT (Molecular human reproduction 2010) 3 44 58
  3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 44 58
  4. Regulation of expression of two LY-6 family genes by intron retention and transcription induced chimerism. (PMID: 18817541) Calvanese V … Aguado B (BMC molecular biology 2008) 22 58
  5. Comparative gene expression profiling of in vitro differentiated megakaryocytes and erythroblasts identifies novel activatory and inhibitory platelet membrane proteins. (PMID: 17192395) Macaulay IC … Ouwehand WH (Blood 2007) 3 58

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Sources for LY6G6F Gene

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