Aliases for LSM6P2 Gene

Aliases for LSM6P2 Gene

  • LSM6 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 2 2 3 5
  • LSM6 Pseudogene 2 2 3
  • LSM6 Homolog, U6 Small Nuclear RNA Associated (S. Cerevisiae) Pseudogene 2 2
  • LSM6 U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 2 3
  • LSM6 Homolog, U6 Small Nuclear RNA Associated Pseudogene 2 3

External Ids for LSM6P2 Gene

Previous GeneCards Identifiers for LSM6P2 Gene

  • GC00U930839
  • GC12U901467
  • GC12P050164

Summaries for LSM6P2 Gene

GeneCards Summary for LSM6P2 Gene

LSM6P2 (LSM6 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 2) is a Pseudogene.

Additional gene information for LSM6P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LSM6P2 Gene

Genomics for LSM6P2 Gene

GeneHancer (GH) Regulatory Elements for LSM6P2 Gene

Promoters and enhancers for LSM6P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J049762 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -5.8 -5814 5.7 CTCF POLR2G GABPA RCOR1 RAD21 SMC3 BCL11A TCF12 MYNN POLR2A piR-30273 TMBIM6 NCKAP5L FMNL3 AQP5 AQP6 MCRS1 DNAJC22 SPATS2 NONHSAG011112.2
GH12J049776 Enhancer 1 Ensembl ENCODE 0.4 +6.4 6441 2.5 CTCF REST KLF7 MYC CTBP1 RAD21 TRIM22 TEAD1 ZEB1 SMC3 NCKAP5L FMNL3 TMBIM6 MCRS1 LSM6P2 lnc-BCDIN3D-1
GH12J049783 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +13.6 13640 3.6 RFX1 CTBP1 RBM25 NR2F2 ZNF316 CEBPG PBX2 NFE2 FOSL1 BCOR LSM6P2 lnc-BCDIN3D-1
GH12J049790 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +19.6 19641 1.2 TEAD4 RFX1 CTCF SIN3A RAD21 ATF2 TEAD3 SREBF1 MAX lnc-BCDIN3D-1 LSM6P2 NCKAP5L
GH12J049797 Enhancer 0.6 Ensembl dbSUPER 0.3 +27.0 27040 2 ZIC2 ZBTB7A GLIS1 ZNF24 GLIS2 lnc-BCDIN3D-1 LSM6P2 NCKAP5L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LSM6P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LSM6P2 Gene

Genomic Locations for LSM6P2 Gene
chr12:49,770,960-49,771,136
(GRCh38/hg38)
Size:
177 bases
Orientation:
Plus strand
chr12:50,164,743-50,164,919
(GRCh37/hg19)
Size:
177 bases
Orientation:
Plus strand

Genomic View for LSM6P2 Gene

Genes around LSM6P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LSM6P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LSM6P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LSM6P2 Gene

Proteins for LSM6P2 Gene

Post-translational modifications for LSM6P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LSM6P2 Gene

Domains & Families for LSM6P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LSM6P2 Gene

Function for LSM6P2 Gene

Phenotypes From GWAS Catalog for LSM6P2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LSM6P2 Gene

Localization for LSM6P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LSM6P2 Gene

Pathways & Interactions for LSM6P2 Gene

PathCards logo

SuperPathways for LSM6P2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LSM6P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LSM6P2 Gene

Drugs & Compounds for LSM6P2 Gene

No Compound Related Data Available

Transcripts for LSM6P2 Gene

mRNA/cDNA for LSM6P2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LSM6P2 Gene

No ASD Table

Relevant External Links for LSM6P2 Gene

GeneLoc Exon Structure for
LSM6P2

Expression for LSM6P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LSM6P2 Gene

genes like me logo Genes that share expression patterns with LSM6P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LSM6P2 Gene

Orthologs for LSM6P2 Gene

Evolution for LSM6P2 Gene

ENSEMBL:
Gene Tree for LSM6P2 (if available)
TreeFam:
Gene Tree for LSM6P2 (if available)

No data available for Orthologs for LSM6P2 Gene

Paralogs for LSM6P2 Gene

No data available for Paralogs for LSM6P2 Gene

Variants for LSM6P2 Gene

Additional Variant Information for LSM6P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LSM6P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LSM6P2 Gene

Disorders for LSM6P2 Gene

No disorders were found for LSM6P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LSM6P2 Gene

Publications for LSM6P2 Gene

No publications were found for LSM6P2 Gene.

No data available for Mastermind for LSM6P2 Gene

Products for LSM6P2 Gene

Sources for LSM6P2 Gene