Aliases for LSM6P1 Gene

Aliases for LSM6P1 Gene

  • LSM6 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 1 2 3
  • LSM6 Pseudogene 1 2 3
  • HsT818 2 3
  • LSM6 Homolog, U6 Small Nuclear RNA Associated (S. Cerevisiae) Pseudogene 1 2
  • LSM6 Homolog, U6 Small Nuclear RNA Associated (S. Cerevisiae) Pseudogene 2
  • LSM6 U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 1 3
  • LSM6 Homolog, U6 Small Nuclear RNA Associated Pseudogene 1 3
  • LSM6 Homolog, U6 Small Nuclear RNA Associated Pseudogene 2
  • LSM6P 3

External Ids for LSM6P1 Gene

Previous HGNC Symbols for LSM6P1 Gene

  • LSM6P

Previous GeneCards Identifiers for LSM6P1 Gene

  • GC18M059285

Summaries for LSM6P1 Gene

GeneCards Summary for LSM6P1 Gene

LSM6P1 (LSM6 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 1) is a Pseudogene.

Additional gene information for LSM6P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LSM6P1 Gene

Genomics for LSM6P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LSM6P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J061635 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -18.6 -18613 3.4 CTCF TRIM22 RXRA SMC3 YY1 FOXA2 RAD21 ZFP37 JUND HNF4A RNF152 ENSG00000267279 ENSG00000267038 LSM6P1 ENSG00000267175 CDH20
GH18J061649 Enhancer 0.7 Ensembl 0.3 -30.5 -30539 0.4 FOXA2 MIER3 RXRA ZBTB33 RARA JUND HNF4A FOXA1 RAD21 REST ENSG00000267038 LSM6P1 ENSG00000267175 RNF152 CDH20
GH18J061650 Enhancer 0.4 ENCODE 0.3 -31.8 -31751 0.1 RXRA HNF4A RAD21 SP1 ENSG00000267038 LOC105372157 LSM6P1 ENSG00000267175 RNF152 CDH20
GH18J061628 Enhancer 0.3 Ensembl 0.4 -9.4 -9439 1.8 EP300 RNF152 ENSG00000267279 LSM6P1 ENSG00000267038 ENSG00000267175 CDH20
GH18J061615 Enhancer 0.2 Ensembl 0.7 +2.2 2161 1.4 RNF152 LSM6P1 HSALNG0121940 ENSG00000267175 CDH20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LSM6P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LSM6P1 Gene

Latest Assembly
chr18:61,618,224-61,618,662
(GRCh38/hg38)
Size:
439 bases
Orientation:
Minus strand

Previous Assembly
chr18:59,285,457-59,285,895
(GRCh37/hg19 by Entrez Gene)
Size:
439 bases
Orientation:
Minus strand

Genomic View for LSM6P1 Gene

Genes around LSM6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LSM6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LSM6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LSM6P1 Gene

Proteins for LSM6P1 Gene

Post-translational modifications for LSM6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LSM6P1 Gene

Domains & Families for LSM6P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LSM6P1 Gene

Function for LSM6P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LSM6P1 Gene

Localization for LSM6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LSM6P1 Gene

Pathways & Interactions for LSM6P1 Gene

PathCards logo

SuperPathways for LSM6P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LSM6P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LSM6P1 Gene

Drugs & Compounds for LSM6P1 Gene

No Compound Related Data Available

Transcripts for LSM6P1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LSM6P1 Gene

No ASD Table

Relevant External Links for LSM6P1 Gene

GeneLoc Exon Structure for
LSM6P1

No data available for mRNA/cDNA for LSM6P1 Gene

Expression for LSM6P1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LSM6P1 Gene

Orthologs for LSM6P1 Gene

No data available for Orthologs and Evolution for LSM6P1 Gene

Paralogs for LSM6P1 Gene

No data available for Paralogs for LSM6P1 Gene

Variants for LSM6P1 Gene

Additional Variant Information for LSM6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LSM6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LSM6P1 Gene

Disorders for LSM6P1 Gene

Additional Disease Information for LSM6P1

Genetic Association Database
(GAD)

No disorders were found for LSM6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LSM6P1 Gene

Publications for LSM6P1 Gene

  1. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 41

No data available for Mastermind for LSM6P1 Gene

Products for LSM6P1 Gene

Sources for LSM6P1 Gene