Aliases for LSM3P5 Gene

Aliases for LSM3P5 Gene

  • LSM3 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 5 2 3 5
  • LSM3 U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 5 2 3
  • LSM3 Pseudogene 5 2 3
  • LSM3 Homolog, U6 Small Nuclear RNA Associated (S. Cerevisiae) Pseudogene 5 2
  • LSM3 Homolog, U6 Small Nuclear RNA Associated Pseudogene 5 3

External Ids for LSM3P5 Gene

Summaries for LSM3P5 Gene

GeneCards Summary for LSM3P5 Gene

LSM3P5 (LSM3 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 5) is a Pseudogene.

Additional gene information for LSM3P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LSM3P5 Gene

Genomics for LSM3P5 Gene

GeneHancer (GH) Regulatory Elements for LSM3P5 Gene

Promoters and enhancers for LSM3P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J078353 Enhancer 0.9 VISTA UCNEbase Ensembl 500.7 -1.5 -1538 1.7 ZNF316 MAFF MAFK MAFG EMSY LSM3P5 lnc-ADAMTS18-10 WWOX
GH16J078363 Enhancer 0.6 VISTA Ensembl 0.4 +8.8 8818 1.4 CTCF NFIC RAD21 GATA2 POLR2A LSM3P5 piR-60246-069 WWOX
GH16J078390 Enhancer 0.8 Ensembl ENCODE 0.3 +34.6 34567 2.1 EP300 FOXA1 RFX1 CTBP1 FOXA2 ZNF316 PBX2 NFE2 TAL1 STAT5A piR-60246-069 LSM3P5 WWOX
GH16J078332 Enhancer 0.5 Ensembl 0.4 -23.5 -23493 0.4 CEBPB SMAD4 HNF4A NFIL3 HLF CEBPG HNF4G CEBPA lnc-ADAMTS18-10 LSM3P5 WWOX
GH16J078391 Enhancer 0.6 Ensembl ENCODE 0.3 +35.9 35878 0.5 FOXA1 RFX1 FOXA2 HLF CEBPB CEBPA piR-60246-069 LSM3P5 WWOX
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LSM3P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LSM3P5 Gene

Genomic Locations for LSM3P5 Gene
chr16:78,355,494-78,356,060
(GRCh38/hg38)
Size:
567 bases
Orientation:
Plus strand
chr16:78,389,420-78,389,957
(GRCh37/hg19)
Size:
538 bases
Orientation:
Plus strand

Genomic View for LSM3P5 Gene

Genes around LSM3P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LSM3P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LSM3P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LSM3P5 Gene

Proteins for LSM3P5 Gene

Post-translational modifications for LSM3P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LSM3P5 Gene

Domains & Families for LSM3P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LSM3P5 Gene

Function for LSM3P5 Gene

Phenotypes From GWAS Catalog for LSM3P5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LSM3P5 Gene

Localization for LSM3P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LSM3P5 Gene

Pathways & Interactions for LSM3P5 Gene

PathCards logo

SuperPathways for LSM3P5 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LSM3P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LSM3P5 Gene

Drugs & Compounds for LSM3P5 Gene

No Compound Related Data Available

Transcripts for LSM3P5 Gene

mRNA/cDNA for LSM3P5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LSM3P5 Gene

No ASD Table

Relevant External Links for LSM3P5 Gene

GeneLoc Exon Structure for
LSM3P5

Expression for LSM3P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LSM3P5 Gene

genes like me logo Genes that share expression patterns with LSM3P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LSM3P5 Gene

Orthologs for LSM3P5 Gene

Evolution for LSM3P5 Gene

ENSEMBL:
Gene Tree for LSM3P5 (if available)
TreeFam:
Gene Tree for LSM3P5 (if available)

No data available for Orthologs for LSM3P5 Gene

Paralogs for LSM3P5 Gene

No data available for Paralogs for LSM3P5 Gene

Variants for LSM3P5 Gene

Additional Variant Information for LSM3P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LSM3P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LSM3P5 Gene

Disorders for LSM3P5 Gene

No disorders were found for LSM3P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LSM3P5 Gene

Publications for LSM3P5 Gene

No publications were found for LSM3P5 Gene.

Products for LSM3P5 Gene

Sources for LSM3P5 Gene