Aliases for LSM3P1 Gene

Aliases for LSM3P1 Gene

  • LSM3 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 1 2 3
  • LSM3 U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 1 2 3
  • LSM3 Pseudogene 1 2 3
  • LSM3 Homolog, U6 Small Nuclear RNA Associated (S. Cerevisiae) Pseudogene 1 2
  • LSM3 Homolog, U6 Small Nuclear RNA Associated Pseudogene 1 3

External Ids for LSM3P1 Gene

Previous GeneCards Identifiers for LSM3P1 Gene

  • GC17M046289

Summaries for LSM3P1 Gene

GeneCards Summary for LSM3P1 Gene

LSM3P1 (LSM3 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated Pseudogene 1) is a Pseudogene.

Additional gene information for LSM3P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LSM3P1 Gene

Genomics for LSM3P1 Gene

GeneHancer (GH) Regulatory Elements for LSM3P1 Gene

Promoters and enhancers for LSM3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J048211 Enhancer 0.5 FANTOM5 500.7 -0.1 -123 0.3 TOE1 RAD51 MITF USF2 RFX1 LSM3P1 MIR1203 HOXB9 HOXB-AS4 SNX11 CBX1 lnc-SNX11-11 SKAP1
GH17J048215 Enhancer 0.7 ENCODE 0.7 -4.0 -3988 0.2 CTCF ZIC2 AFF1 REST RAD21 CTBP1 SMC3 ZBTB17 SKIL IKZF3 COPZ2 MIR1203 HOXB-AS4 HOXB9 CBX1 SNX11 LSM3P1 lnc-SNX11-11 SKAP1
GH17J048219 Enhancer 0.9 Ensembl ENCODE 0.4 -8.2 -8179 0.9 REST ZNF740 MYC HDAC3 LEF1 NCOR1 MBD2 NFIC TCF7L2 MYNN lnc-SNX11-11 SNX11 SKAP1 RNU6-1152P MIR1203 TBX21 LSM3P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LSM3P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LSM3P1 Gene

Genomic Locations for LSM3P1 Gene
chr17:48,211,280-48,211,786
(GRCh38/hg38)
Size:
507 bases
Orientation:
Minus strand
chr17:46,288,425-46,289,148
(GRCh37/hg19)
Size:
724 bases
Orientation:
Minus strand

Genomic View for LSM3P1 Gene

Genes around LSM3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LSM3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LSM3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LSM3P1 Gene

Proteins for LSM3P1 Gene

Post-translational modifications for LSM3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LSM3P1 Gene

Domains & Families for LSM3P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LSM3P1 Gene

Function for LSM3P1 Gene

Phenotypes From GWAS Catalog for LSM3P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LSM3P1 Gene

Localization for LSM3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LSM3P1 Gene

Pathways & Interactions for LSM3P1 Gene

PathCards logo

SuperPathways for LSM3P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LSM3P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LSM3P1 Gene

Drugs & Compounds for LSM3P1 Gene

No Compound Related Data Available

Transcripts for LSM3P1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LSM3P1 Gene

No ASD Table

Relevant External Links for LSM3P1 Gene

GeneLoc Exon Structure for
LSM3P1

No data available for mRNA/cDNA for LSM3P1 Gene

Expression for LSM3P1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LSM3P1 Gene

Orthologs for LSM3P1 Gene

No data available for Orthologs and Evolution for LSM3P1 Gene

Paralogs for LSM3P1 Gene

No data available for Paralogs for LSM3P1 Gene

Variants for LSM3P1 Gene

Additional Variant Information for LSM3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LSM3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LSM3P1 Gene

Disorders for LSM3P1 Gene

No disorders were found for LSM3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LSM3P1 Gene

Publications for LSM3P1 Gene

No publications were found for LSM3P1 Gene.

No data available for Mastermind for LSM3P1 Gene

Products for LSM3P1 Gene

Sources for LSM3P1 Gene