Aliases for LSM1P1 Gene

Aliases for LSM1P1 Gene

  • LSM1 Homolog, MRNA Degradation Associated Pseudogene 1 2 3 5
  • LSM1, U6 Small Nuclear RNA Associated Pseudogene 1 2 3
  • LSM1 Homolog, U6 Small Nuclear RNA Associated Pseudogene 3
  • LSM1 MRNA Degradation Associated Pseudogene 1 3
  • LSM1P1 5

External Ids for LSM1P1 Gene

Previous GeneCards Identifiers for LSM1P1 Gene

  • GC09U902054

Summaries for LSM1P1 Gene

GeneCards Summary for LSM1P1 Gene

LSM1P1 (LSM1 Homolog, MRNA Degradation Associated Pseudogene 1) is a Pseudogene.

Additional gene information for LSM1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LSM1P1 Gene

Genomics for LSM1P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LSM1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J016794 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.4 -19.5 -19496 2.5 BHLHE40 ZNF18 USF1 CEBPB PRDM1 BNC2-AS1 piR-44878-056 lnc-C9orf92-5 LSM1P1 BNC2
GH09J016803 Enhancer 0.9 UCNEbase Ensembl dbSUPER 0.3 -27.3 -27256 3 GATA2 POLR2A MNT BNC2 BNC2-AS1 piR-44878-056 lnc-C9orf92-5 LSM1P1
GH09J016772 Enhancer 0.3 UCNEbase 0.7 +2.8 2844 0.4 BNC2-AS1 BNC2 LSM1P1 lnc-C9orf92-5 piR-38250
GH09J016770 Enhancer 0.3 Ensembl 0.7 +4.4 4444 0.8 MAFK piR-38250 LSM1P1 lnc-C9orf92-5 BNC2
GH09J016787 Enhancer 0.3 Ensembl 0.4 -12.1 -12056 0.2 JUND BNC2 LSM1P1 lnc-C9orf92-5 piR-44878-056
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LSM1P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LSM1P1 Gene

Latest Assembly
chr9:16,775,248-16,775,845
(GRCh38/hg38)
Size:
598 bases
Orientation:
Minus strand

Previous Assembly
chr9:16,775,246-16,775,741
(GRCh37/hg19 by Entrez Gene)
Size:
496 bases
Orientation:
Minus strand

chr9:16,775,571-16,775,843
(GRCh37/hg19 by Ensembl)
Size:
273 bases
Orientation:
Minus strand

Genomic View for LSM1P1 Gene

Genes around LSM1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LSM1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LSM1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LSM1P1 Gene

Proteins for LSM1P1 Gene

Post-translational modifications for LSM1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LSM1P1 Gene

Domains & Families for LSM1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LSM1P1 Gene

Function for LSM1P1 Gene

Phenotypes From GWAS Catalog for LSM1P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LSM1P1 Gene

Localization for LSM1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LSM1P1 Gene

Pathways & Interactions for LSM1P1 Gene

PathCards logo

SuperPathways for LSM1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LSM1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LSM1P1 Gene

Drugs & Compounds for LSM1P1 Gene

No Compound Related Data Available

Transcripts for LSM1P1 Gene

mRNA/cDNA for LSM1P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LSM1P1 Gene

No ASD Table

Relevant External Links for LSM1P1 Gene

GeneLoc Exon Structure for
LSM1P1

Expression for LSM1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LSM1P1 Gene

genes like me logo Genes that share expression patterns with LSM1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LSM1P1 Gene

Orthologs for LSM1P1 Gene

Evolution for LSM1P1 Gene

ENSEMBL:
Gene Tree for LSM1P1 (if available)
TreeFam:
Gene Tree for LSM1P1 (if available)
Alliance of Genome Resources:
Additional Orthologs for LSM1P1

No data available for Orthologs for LSM1P1 Gene

Paralogs for LSM1P1 Gene

No data available for Paralogs for LSM1P1 Gene

Variants for LSM1P1 Gene

Additional Variant Information for LSM1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LSM1P1
Leiden Open Variation Database (LOVD)
LSM1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LSM1P1 Gene

Disorders for LSM1P1 Gene

No disorders were found for LSM1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LSM1P1 Gene

Publications for LSM1P1 Gene

No publications were found for LSM1P1 Gene.

No data available for Mastermind for LSM1P1 Gene

Products for LSM1P1 Gene

Sources for LSM1P1 Gene