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Aliases for LRRN4 Gene

Aliases for LRRN4 Gene

  • Leucine Rich Repeat Neuronal 4 2 3 5
  • Neuronal Leucine-Rich Repeat Protein 4 3 4
  • C20orf75 3 4
  • NLRR-4 3 4
  • Leucine-Rich Repeat Neuronal Protein 4 3
  • Chromosome 20 Open Reading Frame 75 2
  • DJ1056H1.1 3
  • NLRR4 3

External Ids for LRRN4 Gene

Previous HGNC Symbols for LRRN4 Gene

  • C20orf75

Previous GeneCards Identifiers for LRRN4 Gene

  • GC07M099767
  • GC07M099781
  • GC20M005972
  • GC20M006021

Summaries for LRRN4 Gene

GeneCards Summary for LRRN4 Gene

LRRN4 (Leucine Rich Repeat Neuronal 4) is a Protein Coding gene. An important paralog of this gene is LRRN4CL.

UniProtKB/Swiss-Prot for LRRN4 Gene

  • May play an important role in hippocampus-dependent long-lasting memory.

Additional gene information for LRRN4 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRRN4 Gene

Genomics for LRRN4 Gene

GeneHancer (GH) Regulatory Elements for LRRN4 Gene

Promoters and enhancers for LRRN4 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I006051 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE 561.8 +1.0 1042 3.2 CTCF RING1 MXI1 NFIB SIN3A ZIC2 TEAD3 ZNF366 PRDM10 NR2F6 LRRN4 CRLS1 MCM8 GC20M006230
GH20I006055 Enhancer 0.5 ENCODE 550.8 -1.3 -1310 0.2 MEIS2 PKNOX1 LEF1 IKZF1 CBFA2T3 RCOR1 GABPA LRRN4 CRLS1 ENSG00000278192
GH20I006058 Enhancer 0.4 ENCODE 0.8 -4.9 -4854 0.8 FOXA2 PRDM10 FOXA1 CRLS1 LRRN4 ENSG00000278192
GH20I006067 Enhancer 0.5 ENCODE 0.4 -13.8 -13808 1.3 RXRA CEBPB ZMYM3 HNF4A ATF2 GC20P006069 ENSG00000278192 FERMT1 TRMT6 MCM8 LRRN4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LRRN4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LRRN4 gene promoter:

Genomic Locations for LRRN4 Gene

Genomic Locations for LRRN4 Gene
14,336 bases
Minus strand

Genomic View for LRRN4 Gene

Genes around LRRN4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRRN4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRN4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRN4 Gene

Proteins for LRRN4 Gene

  • Protein details for LRRN4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Leucine-rich repeat neuronal protein 4
    Protein Accession:
    Secondary Accessions:
    • A8K258
    • Q5JWV6
    • Q9H419

    Protein attributes for LRRN4 Gene

    740 amino acids
    Molecular mass:
    78843 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LRRN4 Gene

Post-translational modifications for LRRN4 Gene

  • Glycosylation at posLast=4242, isoforms=176, posLast=289289, posLast=379379, posLast=423423, posLast=442442, and isoforms=622
  • Modification sites at PhosphoSitePlus

Other Protein References for LRRN4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LRRN4 Gene

Domains & Families for LRRN4 Gene

Gene Families for LRRN4 Gene

Suggested Antigen Peptide Sequences for LRRN4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LRRN4: view

No data available for UniProtKB/Swiss-Prot for LRRN4 Gene

Function for LRRN4 Gene

Molecular function for LRRN4 Gene

UniProtKB/Swiss-Prot Function:
May play an important role in hippocampus-dependent long-lasting memory.

Phenotypes From GWAS Catalog for LRRN4 Gene

genes like me logo Genes that share phenotypes with LRRN4: view

Animal Models for LRRN4 Gene

MGI Knock Outs for LRRN4:

Animal Model Products

  • Taconic Biosciences Mouse Models for LRRN4

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for LRRN4 Gene

Localization for LRRN4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LRRN4 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LRRN4 gene
Compartment Confidence
extracellular 5
plasma membrane 4
mitochondrion 1
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoli (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for LRRN4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome HDA,IDA 23533145
genes like me logo Genes that share ontologies with LRRN4: view

Pathways & Interactions for LRRN4 Gene

SuperPathways for LRRN4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRRN4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007616 long-term memory IEA,IBA --
GO:0008542 visual learning IEA --
genes like me logo Genes that share ontologies with LRRN4: view

No data available for Pathways by source and SIGNOR curated interactions for LRRN4 Gene

Drugs & Compounds for LRRN4 Gene

No Compound Related Data Available

Transcripts for LRRN4 Gene

mRNA/cDNA for LRRN4 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(24) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LRRN4 Gene

Leucine rich repeat neuronal 4:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LRRN4 Gene

No ASD Table

Relevant External Links for LRRN4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LRRN4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LRRN4 Gene

mRNA differential expression in normal tissues according to GTEx for LRRN4 Gene

This gene is overexpressed in Lung (x15.5), Adipose - Visceral (Omentum) (x14.2), and Kidney - Cortex (x4.9).

Protein differential expression in normal tissues from HIPED for LRRN4 Gene

This gene is overexpressed in Urine (40.4) and Serum (23.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for LRRN4 Gene

Protein tissue co-expression partners for LRRN4 Gene

NURSA nuclear receptor signaling pathways regulating expression of LRRN4 Gene:


SOURCE GeneReport for Unigene cluster for LRRN4 Gene:


Evidence on tissue expression from TISSUES for LRRN4 Gene

  • Kidney(4.2)
  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with LRRN4: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRN4 Gene

Orthologs for LRRN4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LRRN4 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia LRRN4 33 34
  • 99.19 (n)
(Bos Taurus)
Mammalia LRRN4 33 34
  • 76.79 (n)
(Mus musculus)
Mammalia Lrrn4 33 16 34
  • 74.88 (n)
(Rattus norvegicus)
Mammalia Lrrn4 33
  • 73.79 (n)
(Canis familiaris)
Mammalia LRRN4 34
  • 67 (a)
(Monodelphis domestica)
Mammalia LRRN4 34
  • 51 (a)
(Ornithorhynchus anatinus)
Mammalia LRRN4 34
  • 45 (a)
(Gallus gallus)
Aves LRRN4 33 34
  • 53.21 (n)
(Anolis carolinensis)
Reptilia LRRN4 34
  • 36 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia lrrn4 33
  • 47.11 (n)
(Danio rerio)
Actinopterygii CU984579.1 34
  • 25 (a)
FP245511.1 34
  • 25 (a)
Species where no ortholog for LRRN4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LRRN4 Gene

Gene Tree for LRRN4 (if available)
Gene Tree for LRRN4 (if available)

Paralogs for LRRN4 Gene

Paralogs for LRRN4 Gene

genes like me logo Genes that share paralogs with LRRN4: view

Variants for LRRN4 Gene

Sequence variations from dbSNP and Humsavar for LRRN4 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000180547 -- 6,047,585(-) G/T genic_upstream_transcript_variant, intron_variant
rs1000200042 -- 6,047,237(-) C/A genic_upstream_transcript_variant, intron_variant
rs1000266386 -- 6,044,273(-) T/C intron_variant
rs1000312792 -- 6,049,591(-) C/T genic_upstream_transcript_variant, intron_variant
rs1000871629 -- 6,045,752(-) G/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LRRN4 Gene

Variant ID Type Subtype PubMed ID
dgv112n73 CNV deletion 24416366
dgv694n67 CNV loss 20364138
dgv7450n54 CNV loss 21841781
dgv7451n54 CNV loss 21841781
esv26522 CNV loss 19812545
esv2663613 CNV deletion 23128226
esv2722145 CNV deletion 23290073
esv3556784 CNV deletion 23714750
esv3575356 CNV gain 25503493
esv3645113 CNV loss 21293372
esv9591 CNV loss 19470904
nsv1153139 CNV deletion 26484159
nsv585337 CNV loss 21841781
nsv585342 CNV loss 21841781

Variation tolerance for LRRN4 Gene

Residual Variation Intolerance Score: 76.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.94; 93.61% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LRRN4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LRRN4 Gene

Disorders for LRRN4 Gene

Additional Disease Information for LRRN4

No disorders were found for LRRN4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LRRN4 Gene

Publications for LRRN4 Gene

  1. Loci at chromosomes 13, 19 and 20 influence age at natural menopause. (PMID: 19448619) Stolk L … Uitterlinden AG (Nature genetics 2009) 3 44 58
  2. Neuronal leucine-rich repeat protein 4 functions in hippocampus-dependent long-lasting memory. (PMID: 15870286) Bando T … Miyajima A (Molecular and cellular biology 2005) 2 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 58
  5. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S … Drake RR (Proteomics 2013) 3 58

Products for LRRN4 Gene

Sources for LRRN4 Gene

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