Aliases for LRRC8C-DT Gene

Data sources for LRRC8C-DT Gene:

Subcategory (RNA class) for LRRC8C-DT Gene

lncRNA

Aliases for LRRC8C-DT Gene

External Ids for LRRC8C-DT Gene

Summaries for LRRC8C-DT Gene

GeneCards Summary for LRRC8C-DT Gene

LRRC8C-DT (LRRC8C Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LRRC8C-DT include Uterine Corpus Endometrial Carcinoma and Retinitis Pigmentosa 11.

Additional gene information for LRRC8C-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRRC8C-DT Gene

Genomics for LRRC8C-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LRRC8C-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRRC8C-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LRRC8C-DT Gene

Latest Assembly
chr1:89,581,291-89,633,465
(GRCh38/hg38)
Size:
52,175 bases
Orientation:
Minus strand

Previous Assembly
chr1:90,090,408-90,098,453
(GRCh37/hg19 by Entrez Gene)
Size:
8,046 bases
Orientation:
Minus strand

chr1:90,048,800-90,098,453
(GRCh37/hg19 by Ensembl)
Size:
49,654 bases
Orientation:
Minus strand

Genomic View for LRRC8C-DT Gene

Genes around LRRC8C-DT on UCSC Golden Path with GeneCards custom track
LRRC8C-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LRRC8C-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC8C-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC8C-DT Gene

Proteins for LRRC8C-DT Gene

Post-translational modifications for LRRC8C-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC8C-DT Gene

Domains & Families for LRRC8C-DT Gene

Gene Families for LRRC8C-DT Gene

genes like me logo Genes that share domains with LRRC8C-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRRC8C-DT Gene

Function for LRRC8C-DT Gene

Phenotypes From GWAS Catalog for LRRC8C-DT Gene

Phenotypes for LRRC8C-DT Gene

genes like me logo Genes that share phenotypes with LRRC8C-DT: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC8C-DT Gene

Localization for LRRC8C-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC8C-DT Gene

Pathways & Interactions for LRRC8C-DT Gene

PathCards logo

SuperPathways for LRRC8C-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRRC8C-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LRRC8C-DT Gene

Drugs & Compounds for LRRC8C-DT Gene

No Compound Related Data Available

Transcripts for LRRC8C-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LRRC8C-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C18D_9606 lncRNA 792 3

RefSeq: NR_033981,

LNCipedia: LRRC8C-DT:48,

NONCODE: NONHSAT004363.2,

URS000008B833_9606 lncRNA 439 2

Ensembl: ENST00000528692 (view in UCSC) ,

LNCipedia: LRRC8C-DT:51,

URS0000EF18EC_9606 lncRNA 6447 1

Ensembl: ENST00000666432 (view in UCSC) ,

URS0000EF05C8_9606 lncRNA 3774 1

Ensembl: ENST00000660444 (view in UCSC) ,

URS0000EEEADD_9606 lncRNA 2720 1

Ensembl: ENST00000443562 (view in UCSC) ,

LRRC8C-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LRRC8C-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC8C-DT Gene

No ASD Table

Relevant External Links for LRRC8C-DT Gene

GeneLoc Exon Structure for
LRRC8C-DT

Expression for LRRC8C-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LRRC8C-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC8C-DT Gene

Orthologs for LRRC8C-DT Gene

Evolution for LRRC8C-DT Gene

ENSEMBL:
Gene Tree for LRRC8C-DT (if available)
TreeFam:
Gene Tree for LRRC8C-DT (if available)

No data available for Orthologs for LRRC8C-DT Gene

Paralogs for LRRC8C-DT Gene

No data available for Paralogs for LRRC8C-DT Gene

Variants for LRRC8C-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LRRC8C-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LRRC8C-DT Gene

Variant ID Type Subtype PubMed ID
esv3586765 CNV gain 21293372
esv3586769 CNV gain 21293372
nsv508023 OTHER sequence alteration 20534489
nsv830559 CNV gain 17160897

Additional Variant Information for LRRC8C-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC8C-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LRRC8C-DT Gene

Disorders for LRRC8C-DT Gene

MalaCards: The human disease database

(3) MalaCards diseases for LRRC8C-DT Gene - From: COP

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LRRC8C-DT

genes like me logo Genes that share disorders with LRRC8C-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LRRC8C-DT Gene

Publications for LRRC8C-DT Gene

  1. Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes. (PMID: 28881755) Sun Y … Mao Y (Oncotarget 2017) 2 3

Products for LRRC8C-DT Gene

Sources for LRRC8C-DT Gene