LRRC8C-DT Gene (RNA Gene)

LRRC8C Divergent Transcript

GC01M089584
GIFtS:
12
See more...

Aliases for LRRC8C-DT Gene

Data sources for LRRC8C-DT Gene:

Subcategory (RNA class) for LRRC8C-DT Gene

lncRNA

Aliases for LRRC8C-DT Gene

External Ids for LRRC8C-DT Gene

Summaries for LRRC8C-DT Gene

GeneCards Summary for LRRC8C-DT Gene

LRRC8C-DT (LRRC8C Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LRRC8C-DT include Uterine Corpus Endometrial Carcinoma and Retinitis Pigmentosa 11.

Additional gene information for LRRC8C-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRRC8C-DT Gene

Genomics for LRRC8C-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LRRC8C-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRRC8C-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LRRC8C-DT Gene

Latest Assembly
chr1:89,581,291-89,633,465
(GRCh38/hg38)
Size:
52,175 bases
Orientation:
Minus strand

Previous Assembly
chr1:90,090,408-90,098,453
(GRCh37/hg19 by Entrez Gene)
Size:
8,046 bases
Orientation:
Minus strand

chr1:90,048,800-90,098,453
(GRCh37/hg19 by Ensembl)
Size:
49,654 bases
Orientation:
Minus strand

Genomic View for LRRC8C-DT Gene

Genes around LRRC8C-DT on UCSC Golden Path with GeneCards custom track
LRRC8C-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LRRC8C-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC8C-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LRRC8C-DT Gene

Proteins for LRRC8C-DT Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LRRC8C-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC8C-DT Gene

Domains & Families for LRRC8C-DT Gene

Gene Families for LRRC8C-DT Gene

HGNC:
genes like me logo Genes that share domains with LRRC8C-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRRC8C-DT Gene

Function for LRRC8C-DT Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for LRRC8C-DT Gene

Phenotypes for LRRC8C-DT Gene

GenomeRNAi human phenotypes for LRRC8C-DT:
genes like me logo Genes that share phenotypes with LRRC8C-DT: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC8C-DT Gene

Localization for LRRC8C-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC8C-DT Gene

Pathways & Interactions for LRRC8C-DT Gene

PathCards logo

SuperPathways for LRRC8C-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRRC8C-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LRRC8C-DT Gene

Drugs & Compounds for LRRC8C-DT Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for LRRC8C-DT Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LRRC8C-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C18D_9606 lncRNA 792 3

RefSeq: NR_033981,

LNCipedia: LRRC8C-DT:48,

NONCODE: NONHSAT004363.2,

URS000008B833_9606 lncRNA 439 2

Ensembl: ENST00000528692 (view in UCSC) ,

LNCipedia: LRRC8C-DT:51,

URS0000EF18EC_9606 lncRNA 6447 1

Ensembl: ENST00000666432 (view in UCSC) ,

URS0000EF05C8_9606 lncRNA 3774 1

Ensembl: ENST00000660444 (view in UCSC) ,

URS0000EEEADD_9606 lncRNA 2720 1

Ensembl: ENST00000443562 (view in UCSC) ,

LRRC8C-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LRRC8C-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC8C-DT Gene

No ASD Table

Relevant External Links for LRRC8C-DT Gene

GeneLoc Exon Structure for
LRRC8C-DT

Expression for LRRC8C-DT Gene

Products:

  1. Primer products for research

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LRRC8C-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC8C-DT Gene

Orthologs for LRRC8C-DT Gene

Evolution for LRRC8C-DT Gene

ENSEMBL:
Gene Tree for LRRC8C-DT (if available)
TreeFam:
Gene Tree for LRRC8C-DT (if available)

No data available for Orthologs for LRRC8C-DT Gene

Paralogs for LRRC8C-DT Gene

No data available for Paralogs for LRRC8C-DT Gene

Variants for LRRC8C-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LRRC8C-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LRRC8C-DT Gene

Variant ID Type Subtype PubMed ID
esv3586765 CNV gain 21293372
esv3586769 CNV gain 21293372
nsv508023 OTHER sequence alteration 20534489
nsv830559 CNV gain 17160897

Additional Variant Information for LRRC8C-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC8C-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LRRC8C-DT Gene

Disorders for LRRC8C-DT Gene

MalaCards: The human disease database

(3) MalaCards diseases for LRRC8C-DT Gene - From: COP

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LRRC8C-DT

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with LRRC8C-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LRRC8C-DT Gene

Publications for LRRC8C-DT Gene

  1. Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes. (PMID: 28881755) Sun Y … Mao Y (Oncotarget 2017) 2 3

ExternalLinks

View latest publications for LRRC8C-DT gene in Mastermind

Products for LRRC8C-DT Gene

Sources for LRRC8C-DT Gene