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Aliases for LRRC75A-AS1 Gene

Subcategory (RNA class) for LRRC75A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LRRC75A-AS1 Gene

  • LRRC75A Antisense RNA 1 2 3 4 5
  • FAM211A Antisense RNA 1 2 3 4
  • C17orf76 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C17orf76-AS1 3 4
  • FAM211A-AS1 3 4
  • NCRNA00188 3 4
  • C17orf45 3 4
  • Putative Uncharacterized Protein FAM211A-AS1, Mitochondrial 4
  • Chromosome 17 Open Reading Frame 45 2
  • Non-Protein Coding RNA 188 2
  • C17orf76 Antisense RNA 1 2
  • TSAP19 3

External Ids for LRRC75A-AS1 Gene

Previous HGNC Symbols for LRRC75A-AS1 Gene

  • C17orf45
  • NCRNA00188
  • C17orf76-AS1
  • FAM211A-AS1

Previous GeneCards Identifiers for LRRC75A-AS1 Gene

  • GC17P016374

Summaries for LRRC75A-AS1 Gene

GeneCards Summary for LRRC75A-AS1 Gene

LRRC75A-AS1 (LRRC75A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LRRC75A-AS1 include Rheumatoid Arthritis.

Additional gene information for LRRC75A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRRC75A-AS1 Gene

Genomics for LRRC75A-AS1 Gene

GeneHancer (GH) Regulatory Elements for LRRC75A-AS1 Gene

Promoters and enhancers for LRRC75A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J016438 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 31.4 +2.6 2596 6.8 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC ENSG00000266651 GC17P016459 GC17P016461 GC17P016462 GC17P016463 GC17P016464 PIR56387 PIR32622 SNORD49A SNORD49B
GH17J016406 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 23.2 -31.1 -31111 2.2 HDGF SMAD1 ZFP64 SIN3A FEZF1 YBX1 IRF4 ZNF213 ZNF207 ZNF548 PIGL ENSG00000266538 PPIAP53 NCOR1 TVP23C MPRIP-AS1 LOC644422 ZNF286A ACTG1P24 ENSG00000264729
GH17J016462 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 24.6 +28.4 28425 8.9 CTCF ZNF146 KLF1 TFAP4 FOXA2 RARA GATA3 RERE POLR2A SMC3 LRRC75A-AS1 LRRC75A PLD6 PIGL GC17M016479 PIR35161
GH17J016377 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 11.4 -58.7 -58721 4.6 ZFP64 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC PPARGC1A UBB ENSG00000266538 PIGL PPIAP53 NCOR1 TVP23C LOC644422 LRRC75A-AS1 FLCN ACTG1P24
GH17J016212 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 10.8 -223.3 -223295 5.9 MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 ZC3H11A ZFP41 PIGL NCOR1 ENSG00000266538 ZSWIM7 TVP23C PPIAP53 LOC644422 ZNF286A UPF3AP1 MPRIP-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LRRC75A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LRRC75A-AS1 Gene

Genomic Locations for LRRC75A-AS1 Gene
chr17:16,438,822-16,478,678
(GRCh38/hg38)
Size:
39,857 bases
Orientation:
Plus strand
chr17:16,342,136-16,381,992
(GRCh37/hg19)
Size:
39,857 bases
Orientation:
Plus strand

Genomic View for LRRC75A-AS1 Gene

Genes around LRRC75A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRRC75A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC75A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC75A-AS1 Gene

Proteins for LRRC75A-AS1 Gene

  • Protein details for LRRC75A-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1F1-C1AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein LRRC75A-AS1, mitochondrial
    Protein Accession:
    Q8N1F1

    Protein attributes for LRRC75A-AS1 Gene

    Size:
    130 amino acids
    Molecular mass:
    13824 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LRRC75A-AS1 Gene

Post-translational modifications for LRRC75A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC75A-AS1 Gene

Domains & Families for LRRC75A-AS1 Gene

Protein Domains for LRRC75A-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LRRC75A-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LRRC75A-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LRRC75A-AS1 Gene

Function for LRRC75A-AS1 Gene

Gene Ontology (GO) - Molecular Function for LRRC75A-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LRRC75A-AS1: view
genes like me logo Genes that share phenotypes with LRRC75A-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LRRC75A-AS1

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC75A-AS1 Gene

Localization for LRRC75A-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LRRC75A-AS1 Gene

Mitochondrion.

Gene Ontology (GO) - Cellular Components for LRRC75A-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with LRRC75A-AS1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LRRC75A-AS1 Gene

Pathways & Interactions for LRRC75A-AS1 Gene

SuperPathways for LRRC75A-AS1 Gene

No Data Available

Interacting Proteins for LRRC75A-AS1 Gene

Selected Interacting proteins: Q8N1F1-C1AS1_HUMAN for LRRC75A-AS1 Gene via IID UniProtKB MINT

Gene Ontology (GO) - Biological Process for LRRC75A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LRRC75A-AS1 Gene

Drugs & Compounds for LRRC75A-AS1 Gene

No Compound Related Data Available

Transcripts for LRRC75A-AS1 Gene

mRNA/cDNA for LRRC75A-AS1 Gene

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LRRC75A-AS1

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC75A-AS1 Gene

No ASD Table

Relevant External Links for LRRC75A-AS1 Gene

GeneLoc Exon Structure for
LRRC75A-AS1
ECgene alternative splicing isoforms for
LRRC75A-AS1

Expression for LRRC75A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LRRC75A-AS1 Gene

Protein differential expression in normal tissues from HIPED for LRRC75A-AS1 Gene

This gene is overexpressed in Liver (31.5) and Heart (27.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LRRC75A-AS1 Gene



Protein tissue co-expression partners for LRRC75A-AS1 Gene

genes like me logo Genes that share expression patterns with LRRC75A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC75A-AS1 Gene

Orthologs for LRRC75A-AS1 Gene

Evolution for LRRC75A-AS1 Gene

ENSEMBL:
Gene Tree for LRRC75A-AS1 (if available)
TreeFam:
Gene Tree for LRRC75A-AS1 (if available)

No data available for Orthologs for LRRC75A-AS1 Gene

Paralogs for LRRC75A-AS1 Gene

No data available for Paralogs for LRRC75A-AS1 Gene

Variants for LRRC75A-AS1 Gene

Sequence variations from dbSNP and Humsavar for LRRC75A-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000007923 -- 16,437,056(+) A/G upstream_transcript_variant
rs1000110017 -- 16,458,946(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000128171 -- 16,458,670(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000181144 -- 16,468,459(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000348007 -- 16,464,706(+) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LRRC75A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1063941 CNV gain 25217958
nsv1063764 CNV loss 25217958
esv3640103 CNV gain 21293372
esv3640102 CNV gain 21293372
esv2715702 CNV deletion 23290073

Additional Variant Information for LRRC75A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC75A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LRRC75A-AS1 Gene

Disorders for LRRC75A-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LRRC75A-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
rheumatoid arthritis
  • ra
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LRRC75A-AS1

genes like me logo Genes that share disorders with LRRC75A-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LRRC75A-AS1 Gene

Publications for LRRC75A-AS1 Gene

  1. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. (PMID: 27716329) Zhang Y … Li XJ (Arthritis research & therapy 2016) 2 3 58
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  3. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A … Wanker EE (Science signaling 2011) 3 58
  4. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K … Gorospe M (The EMBO journal 2009) 3 58
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58

Products for LRRC75A-AS1 Gene

  • Biorbyt antibodies for LRRC75A-AS1

Sources for LRRC75A-AS1 Gene

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