Aliases for LRRC7-AS1 Gene

Subcategory (RNA class) for LRRC7-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LRRC7-AS1 Gene

  • LRRC7 Antisense RNA 1 2 3 5
  • LRRC7-AS1 2 5
  • NONHSAG001786.2 91
  • HSALNG0004359 164
  • HSALNG0004356 164
  • Lnc-LRRC40-2 165
  • Lnc-LRRC40-4 165

External Ids for LRRC7-AS1 Gene

Summaries for LRRC7-AS1 Gene

GeneCards Summary for LRRC7-AS1 Gene

LRRC7-AS1 (LRRC7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LRRC7-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRRC7-AS1 Gene

Genomics for LRRC7-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LRRC7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J070042 Enhancer 1.1 FANTOM5 Ensembl 600.7 +0.3 260 2.4 LEF1 IKZF1 JUND PKNOX1 NR2C1 ZNF24 DPF2 SOX6 FOXJ2 GATAD2B LRRC7-AS1 RF00017-243 LRRC7 CTH LRRC40
GH01J069993 Enhancer 0.7 Ensembl 11.5 +48.0 47961 1 CREB1 ATF7 ZNF629 ZNF37A SMARCC1 ZNF10 OSR2 ZNF580 ATF2 JUND LRRC7-AS1 SRSF11 ANKRD13C lnc-SRSF11-4 piR-58308-011 LRRC40 LRRC7
GH01J069983 Enhancer 0.7 Ensembl 11.7 +58.9 58861 0.8 ZNF629 JUND CEBPB ZEB1 JUN FOS EP300 KLF8 ZNF184 ZNF189 LRRC7-AS1 lnc-SRSF11-4 piR-58308-011 LRRC40 LRRC7
GH01J069976 Enhancer 0.6 Ensembl 10.9 +65.1 65060 1.6 CREB1 ATF7 JUND EGR1 FOS GABPA ATF2 ZFHX2 CREM ATF3 LRRC7-AS1 lnc-SRSF11-4 piR-58308-011 LRRC40 LRRC7
GH01J070071 Enhancer 0.5 Ensembl 10.9 -29.8 -29839 1.8 PKNOX1 ZBTB44 EZH2 OSR2 ZBTB40 ZNF366 FEZF1 ZNF362 5MWI_A-005 LRRC7-AS1 LRRC40 LRRC7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRRC7-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LRRC7-AS1 Gene

Genomic Locations for LRRC7-AS1 Gene
chr1:70,013,982-70,042,261
(GRCh38/hg38)
Size:
28,280 bases
Orientation:
Minus strand
chr1:70,479,665-70,496,905
(GRCh37/hg19)
Size:
17,241 bases
Orientation:
Minus strand

Genomic View for LRRC7-AS1 Gene

Genes around LRRC7-AS1 on UCSC Golden Path with GeneCards custom track
LRRC7-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LRRC7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC7-AS1 Gene

Proteins for LRRC7-AS1 Gene

Post-translational modifications for LRRC7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC7-AS1 Gene

Domains & Families for LRRC7-AS1 Gene

Gene Families for LRRC7-AS1 Gene

genes like me logo Genes that share domains with LRRC7-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRRC7-AS1 Gene

Function for LRRC7-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC7-AS1 Gene

Localization for LRRC7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC7-AS1 Gene

Pathways & Interactions for LRRC7-AS1 Gene

PathCards logo

SuperPathways for LRRC7-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRRC7-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LRRC7-AS1 Gene

Drugs & Compounds for LRRC7-AS1 Gene

No Compound Related Data Available

Transcripts for LRRC7-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LRRC7-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000031716C_9606 lncRNA 523 4

Ensembl: ENST00000414132 (view in UCSC) ,

LncBook: HSALNT0008655,

LNCipedia: lnc-LRRC40-2:1,

NONCODE: NONHSAT003840.2,

URS00004BBE5A_9606 lncRNA 694 3

HGNC: 40843,

Ensembl: ENST00000425754 (view in UCSC) ,

LNCipedia: lnc-LRRC40-2:2,

URS00008C0CCA_9606 lncRNA 965 3

LncBook: HSALNT0008659,

LNCipedia: lnc-LRRC40-4:1,

NONCODE: NONHSAT003842.2,

URS00009B7137_9606 lncRNA 1030 1

NONCODE: NONHSAT151762.1,

URS00009C5F1C_9606 lncRNA 948 1

NONCODE: NONHSAT151761.1,

LRRC7-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC7-AS1 Gene

No ASD Table

Relevant External Links for LRRC7-AS1 Gene

GeneLoc Exon Structure for
LRRC7-AS1

No data available for mRNA/cDNA for LRRC7-AS1 Gene

Expression for LRRC7-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LRRC7-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC7-AS1 Gene

Orthologs for LRRC7-AS1 Gene

Evolution for LRRC7-AS1 Gene

ENSEMBL:
Gene Tree for LRRC7-AS1 (if available)
TreeFam:
Gene Tree for LRRC7-AS1 (if available)

No data available for Orthologs for LRRC7-AS1 Gene

Paralogs for LRRC7-AS1 Gene

No data available for Paralogs for LRRC7-AS1 Gene

Variants for LRRC7-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LRRC7-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs1135401780 Uncertain Significance: Intellectual disability 70,039,454(-) T/G NONSENSE

Additional dbSNP identifiers (rs#s) for LRRC7-AS1 Gene

Additional Variant Information for LRRC7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LRRC7-AS1 Gene

Disorders for LRRC7-AS1 Gene

No disorders were found for LRRC7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LRRC7-AS1 Gene

Publications for LRRC7-AS1 Gene

No publications were found for LRRC7-AS1 Gene.

No data available for Mastermind for LRRC7-AS1 Gene

Products for LRRC7-AS1 Gene

Sources for LRRC7-AS1 Gene