Aliases for LRRC52-AS1 Gene

Subcategory (RNA class) for LRRC52-AS1 Gene


Number of RNA Genes sources:

3 / 17

Aliases for LRRC52-AS1 Gene

  • LRRC52 Antisense RNA 1 2 3 5
  • LRRC52-AS1 2 5
  • NONHSAG003335.2 91
  • HSALNG0008139 164
  • Lnc-RXRG-1 165

External Ids for LRRC52-AS1 Gene

Summaries for LRRC52-AS1 Gene

GeneCards Summary for LRRC52-AS1 Gene

LRRC52-AS1 (LRRC52 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LRRC52-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRRC52-AS1 Gene

Genomics for LRRC52-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LRRC52-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J165527 Promoter 0.3 EPDnew 600.2 +54.5 54484 0.1 RXRG LRRC52-AS1 LRRC52 ENSG00000230748 lnc-LRRC52-1
GH01J165557 Enhancer 0.3 Ensembl 12 +20.9 20855 1.4 NR2F2 NANOG MGST3 LRRC52-AS1 RXRG LRRC52 ALDH9A1 RPS2P10
GH01J165544 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 0.3 +38.0 37954 1.6 PRDM10 ZNF629 KDM1A PRDM1 ZIC2 PATZ1 ZNF561 TSHZ1 OSR2 USF1 LRRC52 LRRC52-AS1 RPS2P10 MGST3
GH01J165593 Enhancer 0.8 Ensembl ENCODE 0.4 -11.3 -11268 1.2 CTCF REST RAD21 TRIM22 ZNF524 SMC3 ZBTB17 SKIL ZNF654 ZNF2 MGST3 LRRC52 RXRG LMX1A RF00005-020 TRK-CTT13-1 LRRC52-AS1
GH01J165538 Enhancer 0.8 Ensembl ENCODE 0.3 +42.1 42070 2.6 RFX1 ZNF639 ZNF10 FOXA2 OSR2 JUN ZBTB17 PKNOX1 JUND NR2F2 MGST3 LRRC52 RXRG lnc-LRRC52-1 LRRC52-AS1 ENSG00000230748
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRRC52-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LRRC52-AS1 Gene

Genomic Locations for LRRC52-AS1 Gene
105,318 bases
Minus strand
105,315 bases
Minus strand

Genomic View for LRRC52-AS1 Gene

Genes around LRRC52-AS1 on UCSC Golden Path with GeneCards custom track
LRRC52-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LRRC52-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC52-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC52-AS1 Gene

Proteins for LRRC52-AS1 Gene

Post-translational modifications for LRRC52-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC52-AS1 Gene

Domains & Families for LRRC52-AS1 Gene

Gene Families for LRRC52-AS1 Gene

genes like me logo Genes that share domains with LRRC52-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRRC52-AS1 Gene

Function for LRRC52-AS1 Gene

Phenotypes From GWAS Catalog for LRRC52-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC52-AS1 Gene

Localization for LRRC52-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC52-AS1 Gene

Pathways & Interactions for LRRC52-AS1 Gene

PathCards logo

SuperPathways for LRRC52-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRRC52-AS1 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LRRC52-AS1 Gene

Drugs & Compounds for LRRC52-AS1 Gene

No Compound Related Data Available

Transcripts for LRRC52-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LRRC52-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000061768C_9606 lncRNA 287 4

Ensembl: ENST00000454251 (view in UCSC) ,

LncBook: HSALNT0016882,

LNCipedia: lnc-RXRG-1:5,


URS0000779B4D_9606 lncRNA 2400 3

Ensembl: ENST00000438275 (view in UCSC) ,

LNCipedia: lnc-RXRG-1:2,


URS00008E3971_9606 lncRNA 1803 3

HGNC: 54044,

RefSeq: NR_026744,

LNCipedia: lnc-RXRG-1:12,

URS000076CCEB_9606 lncRNA 1752 3

Ensembl: ENST00000421273 (view in UCSC) ,

LNCipedia: lnc-RXRG-1:3,


URS000077928B_9606 lncRNA 1717 3

Ensembl: ENST00000416424 (view in UCSC) ,

LNCipedia: lnc-RXRG-1:1,


LRRC52-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LRRC52-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC52-AS1 Gene

No ASD Table

Relevant External Links for LRRC52-AS1 Gene

GeneLoc Exon Structure for

Expression for LRRC52-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LRRC52-AS1

SOURCE GeneReport for Unigene cluster for LRRC52-AS1 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC52-AS1 Gene

Orthologs for LRRC52-AS1 Gene

Evolution for LRRC52-AS1 Gene

Gene Tree for LRRC52-AS1 (if available)
Gene Tree for LRRC52-AS1 (if available)

No data available for Orthologs for LRRC52-AS1 Gene

Paralogs for LRRC52-AS1 Gene

No data available for Paralogs for LRRC52-AS1 Gene

Variants for LRRC52-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LRRC52-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
714609 Benign: not provided 165,544,641(-) G/C SYNONYMOUS_VARIANT
783012 Benign: not provided 165,563,711(-) C/T MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for LRRC52-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for LRRC52-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv217n106 CNV deletion 24896259
esv1117485 CNV insertion 17803354
esv2659702 CNV deletion 23128226
esv3307100 CNV mobile element insertion 20981092
esv3323222 CNV insertion 20981092
esv3384985 CNV insertion 20981092
esv3587805 CNV loss 21293372
esv3587807 CNV loss 21293372
esv993172 CNV insertion 20482838
nsv3376 CNV insertion 18451855
nsv3387 CNV insertion 18451855
nsv946479 CNV duplication 23825009

Additional Variant Information for LRRC52-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LRRC52-AS1 Gene

Disorders for LRRC52-AS1 Gene

Additional Disease Information for LRRC52-AS1

No disorders were found for LRRC52-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LRRC52-AS1 Gene

Publications for LRRC52-AS1 Gene

  1. Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects. (PMID: 22903471) Hibar DP … Alzheimer’s Disease Neuroimaging Initiative (Brain imaging and behavior 2013) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LRRC52-AS1 Gene

Products for LRRC52-AS1 Gene

Sources for LRRC52-AS1 Gene