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Aliases for LRRC37A6P Gene

Aliases for LRRC37A6P Gene

  • Leucine Rich Repeat Containing 37 Member A6, Pseudogene 2 3 5
  • Leucine Rich Repeat Containing 37, Member A Family Pseudogene 3
  • LRRC37E 3

External Ids for LRRC37A6P Gene

Previous GeneCards Identifiers for LRRC37A6P Gene

  • GC10M027545
  • GC10M027552
  • GC10M027557
  • GC10M027561

Summaries for LRRC37A6P Gene

GeneCards Summary for LRRC37A6P Gene

LRRC37A6P (Leucine Rich Repeat Containing 37 Member A6, Pseudogene) is a Pseudogene.

Additional gene information for LRRC37A6P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRRC37A6P Gene

Genomics for LRRC37A6P Gene

GeneHancer (GH) Regulatory Elements for LRRC37A6P Gene

Promoters and enhancers for LRRC37A6P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J027152 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 5.9 +104.5 104473 5.2 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC MASTL YME1L1 ANKRD26 SELENOOLP FAM238C LRRC37A6P
GH10J028177 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 4.7 -919.2 -919177 1.9 CTCF IRF2 ZNF654 ZBTB6 TRIM22 REST RAD21 IRF9 ZNF335 GATA3 MKX-AS1 MKX LRRC37A6P MIR8086 MPP7 MRPS21P5
GH10J028179 Enhancer 0.8 ENCODE dbSUPER 4.6 -920.2 -920222 0.2 CTCF ZNF654 TRIM22 REST RAD21 GATA3 SMC3 ZNF143 MKX-AS1 MKX LRRC37A6P MIR8086 MPP7 MRPS21P5
GH10J027256 Enhancer 0.4 ENCODE 5.3 +2.1 2060 0.8 POLR2A REST ARMC4P1 MASTL LRRC37A6P GC10P027253
GH10J028185 Enhancer 0.2 dbSUPER 5.3 -926.4 -926387 1.2 MKX MKX-AS1 LRRC37A6P MPP7 MIR8086 MRPS21P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LRRC37A6P on UCSC Golden Path with GeneCards custom track

Genomic Locations for LRRC37A6P Gene

Genomic Locations for LRRC37A6P Gene
chr10:27,245,853-27,259,455
(GRCh38/hg38)
Size:
13,603 bases
Orientation:
Minus strand
chr10:27,534,782-27,548,384
(GRCh37/hg19)
Size:
13,603 bases
Orientation:
Minus strand

Genomic View for LRRC37A6P Gene

Genes around LRRC37A6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRRC37A6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC37A6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC37A6P Gene

Proteins for LRRC37A6P Gene

Post-translational modifications for LRRC37A6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC37A6P Gene

Domains & Families for LRRC37A6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LRRC37A6P Gene

Function for LRRC37A6P Gene

Phenotypes From GWAS Catalog for LRRC37A6P Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LRRC37A6P

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC37A6P Gene

Localization for LRRC37A6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC37A6P Gene

Pathways & Interactions for LRRC37A6P Gene

SuperPathways for LRRC37A6P Gene

No Data Available

Interacting Proteins for LRRC37A6P Gene

Gene Ontology (GO) - Biological Process for LRRC37A6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LRRC37A6P Gene

Drugs & Compounds for LRRC37A6P Gene

No Compound Related Data Available

Transcripts for LRRC37A6P Gene

mRNA/cDNA for LRRC37A6P Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LRRC37A6P Gene

Leucine rich repeat containing 37, member A6, pseudogene:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LRRC37A6P

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC37A6P Gene

No ASD Table

Relevant External Links for LRRC37A6P Gene

GeneLoc Exon Structure for
LRRC37A6P
ECgene alternative splicing isoforms for
LRRC37A6P

Expression for LRRC37A6P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LRRC37A6P Gene

mRNA differential expression in normal tissues according to GTEx for LRRC37A6P Gene

This gene is overexpressed in Testis (x9.3) and Brain - Nucleus accumbens (basal ganglia) (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of LRRC37A6P Gene:

LRRC37A6P

SOURCE GeneReport for Unigene cluster for LRRC37A6P Gene:

Hs.631829
genes like me logo Genes that share expression patterns with LRRC37A6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC37A6P Gene

Orthologs for LRRC37A6P Gene

Evolution for LRRC37A6P Gene

ENSEMBL:
Gene Tree for LRRC37A6P (if available)
TreeFam:
Gene Tree for LRRC37A6P (if available)

No data available for Orthologs for LRRC37A6P Gene

Paralogs for LRRC37A6P Gene

No data available for Paralogs for LRRC37A6P Gene

Variants for LRRC37A6P Gene

Sequence variations from dbSNP and Humsavar for LRRC37A6P Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000248089 -- 27,253,184(-) CCCC/CCC upstream_transcript_variant
rs1000383979 -- 27,252,914(-) C/T upstream_transcript_variant
rs1001032282 -- 27,248,885(-) T/G non_coding_transcript_variant
rs1001112628 -- 27,248,485(-) G/A non_coding_transcript_variant
rs1001200129 -- 27,252,035(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LRRC37A6P Gene

Variant ID Type Subtype PubMed ID
nsv947786 CNV duplication 23825009
nsv8614 CNV loss 18304495
nsv1116452 OTHER inversion 24896259
esv3622711 CNV gain 21293372
esv3622708 CNV gain 21293372
esv2664616 CNV deletion 23128226
esv2422253 CNV deletion 17116639

Additional Variant Information for LRRC37A6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC37A6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LRRC37A6P Gene

Disorders for LRRC37A6P Gene

Additional Disease Information for LRRC37A6P

No disorders were found for LRRC37A6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LRRC37A6P Gene

Publications for LRRC37A6P Gene

  1. Evolutionary dynamism of the primate LRRC37 gene family. (PMID: 23064749) Giannuzzi G … Eichler EE (Genome research 2013) 2 3 58

Products for LRRC37A6P Gene

Sources for LRRC37A6P Gene

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