Aliases for LRRC37A5P Gene

Aliases for LRRC37A5P Gene

  • Leucine Rich Repeat Containing 37 Member A5, Pseudogene 2 3 5
  • C9orf29 3 4
  • Leucine-Rich Repeat-Containing 37 Member A5 Pseudogene 4
  • Chromosome 9 Open Reading Frame 29 2
  • Putative Protein LRRC37A5P 4
  • LRRC37A5P 5

External Ids for LRRC37A5P Gene

Previous HGNC Symbols for LRRC37A5P Gene

  • C9orf29

Previous GeneCards Identifiers for LRRC37A5P Gene

  • GC09M114366

Summaries for LRRC37A5P Gene

GeneCards Summary for LRRC37A5P Gene

LRRC37A5P (Leucine Rich Repeat Containing 37 Member A5, Pseudogene) is a Pseudogene.

Additional gene information for LRRC37A5P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LRRC37A5P Gene

Genomics for LRRC37A5P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LRRC37A5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J111630 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 265.7 -0.6 -612 3.4 CHD2 TBP SP1 MXD4 CEBPA SIX5 NR2C1 MNT DEK SMAD5 LRRC37A5P DNAJC25 DNAJC25-GNG10 LOC107987116 lnc-PTGR1-1 RPL32P22 GNG10 piR-52438-117
GH09J111597 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 6.7 +32.3 32288 2.8 CEBPA MNT CTCF ZIC2 CEBPB SIN3A REST MAX SAP130 ZNF341 PTGR1 lnc-C9orf84-1 GNG10 LRRC37A5P ZNF483 HSALNG0073695 lnc-PTGR1-1
GH09J111648 Enhancer 0.6 Ensembl ENCODE 11.3 -16.8 -16812 2.2 RXRA HNF4A CEBPB NR2F2 SP1 HSALNG0073702 LRRC37A5P piR-49732-605 GNG10 DNAJC25 DNAJC25-GNG10
GH09J111656 Enhancer 0.6 Ensembl ENCODE 11.2 -26.4 -26395 1.9 ATF2 USF2 USF1 lnc-GNG10-1 lnc-GNG10-2 GNG10 LRRC37A5P HSALNG0073702 DNAJC25 DNAJC25-GNG10
GH09J112308 Enhancer 1 Ensembl ENCODE 4.7 -682.1 -682112 11.2 MNT FOXA2 VEZF1 ZFP91 NKRF ZNF316 ADNP PRDM10 FOXP1 NCOA2 SUSD1 PTBP3 PRPF4 ENSG00000225513 HSDL2 ENSG00000259953 LRRC37A5P piR-57135-123
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LRRC37A5P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LRRC37A5P Gene

Latest Assembly
chr9:111,602,831-111,631,289
(GRCh38/hg38)
Size:
28,459 bases
Orientation:
Minus strand

Previous Assembly
chr9:114,365,111-114,375,833
(GRCh37/hg19 by Entrez Gene)
Size:
10,723 bases
Orientation:
Minus strand

chr9:114,353,872-114,393,569
(GRCh37/hg19 by Ensembl)
Size:
39,698 bases
Orientation:
Minus strand

Genomic View for LRRC37A5P Gene

Genes around LRRC37A5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRRC37A5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC37A5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC37A5P Gene

Proteins for LRRC37A5P Gene

  • Protein details for LRRC37A5P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q49AS3-L37A5_HUMAN
    Recommended name:
    Putative protein LRRC37A5P
    Protein Accession:
    Q49AS3
    Secondary Accessions:
    • Q5JVP0

    Protein attributes for LRRC37A5P Gene

    Size:
    106 amino acids
    Molecular mass:
    12596 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH31236.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};

neXtProt entry for LRRC37A5P Gene

Post-translational modifications for LRRC37A5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC37A5P Gene

Domains & Families for LRRC37A5P Gene

Protein Domains for LRRC37A5P Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with LRRC37A5P: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LRRC37A5P Gene

Function for LRRC37A5P Gene

Phenotypes From GWAS Catalog for LRRC37A5P Gene

Animal Models for research

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC37A5P Gene

Localization for LRRC37A5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LRRC37A5P Gene

Pathways & Interactions for LRRC37A5P Gene

PathCards logo

SuperPathways for LRRC37A5P Gene

No Data Available

Gene Ontology (GO) - Biological Process for LRRC37A5P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LRRC37A5P Gene

Drugs & Compounds for LRRC37A5P Gene

No Compound Related Data Available

Transcripts for LRRC37A5P Gene

mRNA/cDNA for LRRC37A5P Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LRRC37A5P

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC37A5P Gene

No ASD Table

Relevant External Links for LRRC37A5P Gene

GeneLoc Exon Structure for
LRRC37A5P

Expression for LRRC37A5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LRRC37A5P Gene

mRNA differential expression in normal tissues according to GTEx for LRRC37A5P Gene

This gene is overexpressed in Testis (x7.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LRRC37A5P

SOURCE GeneReport for Unigene cluster for LRRC37A5P Gene:

Hs.551134
genes like me logo Genes that share expression patterns with LRRC37A5P: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC37A5P Gene

Orthologs for LRRC37A5P Gene

Evolution for LRRC37A5P Gene

ENSEMBL:
Gene Tree for LRRC37A5P (if available)
TreeFam:
Gene Tree for LRRC37A5P (if available)

No data available for Orthologs for LRRC37A5P Gene

Paralogs for LRRC37A5P Gene

(4) SIMAP similar genes for LRRC37A5P Gene using alignment to 1 proteins:

  • L37A5_HUMAN
genes like me logo Genes that share paralogs with LRRC37A5P: view

No data available for Paralogs for LRRC37A5P Gene

Variants for LRRC37A5P Gene

Structural Variations from Database of Genomic Variants (DGV) for LRRC37A5P Gene

Variant ID Type Subtype PubMed ID
esv275316 CNV gain+loss 21479260
nsv1054737 CNV gain 25217958
nsv825041 CNV gain 20364138
nsv972799 CNV duplication 23825009

Additional Variant Information for LRRC37A5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC37A5P

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for LRRC37A5P Gene

Disorders for LRRC37A5P Gene

Additional Disease Information for LRRC37A5P

No disorders were found for LRRC37A5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LRRC37A5P Gene

Publications for LRRC37A5P Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LRRC37A5P Gene

Sources for LRRC37A5P Gene